Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02249 ATGGATGTTCCATCAAGGATTGTTGAACCTTTTATTGGGAACTTAGAAAATATTATCCTTACAGAGGTCACGTCAAAACTGAGGCATTATCCTAAAGAATATGTCCAACAATTCATGGCAGAAGCAATGTCATTTGTTTTGAGGAATGCCTCAAACGAGCAGCTCGAAAGAGTTAGAAGAGTAATTGATAATGCAGTGAAGAAGCCATCTCTGTGTAGAGAATCAGGTGTCAAGTTCCATTCAAAAGCAGATAGAGTGTTACAATTATTGACCAGTGAAGCAATTTATCCTGTTGGTGATAAAGCTAACCAAGGTGCTACGGTTTGTCGGCAGTTTGAAGATGAGAAGTGCAGGGTAGAACCACAGATTGGTTCGTGTGGTGACTCTTTGAGGTGTCGGGCTGAAACCCATGCATTTGGTTGTGGCAGGAACAGTCTCATTCTTCACACGTCGCCTCACCATCCTGTGACGTTATCATTCTCCCTGCCCGCACTGCCCGTTCTGCCCGACCCCCAGCGAGGTTTGGCGGGTTCTGAGGGCTTCTGGTGTGGAATTAGGAGGGGATTTGATGGTACGCGTTGGGGAAAATGCAAGGCTATGCATGGGCGTGGAGGTGAGAAGGAAAAGGGGACTCGGCACATGTGGAAAGCCCCCACACGTGGCGACTCGTCTCTGAACGCCGATGTTTCTTCGTCTTCTTCTTCGTCGTCGTCGACAGTGAAGTCGTTCTTGAAGGACGGTCGCAAAATTAGTGTTGGTGAATGTGCTCTCTTCAAACCATCTGAAGATCGCCCACCATTTATTGGTATAATCCGTAGTTTGACGATTGGCAAAGATAAAAAATTGAAGTTTGGTGTCAGTTGGCTCTATCGACCCATTGAAGTAAAACTCAGCAAGGGCGTGCCATTGGAGGCTGCTCCAAACGAGATATTCTACACCTTCCATAAGGATGAGATTGATGCTGAATCGCTGCTCCATCCTTGCAAAGTCTCATTTCTTCCTAAGAGTGCTGAATTTCCATCCGGGATTTCTTCTTTTGTGTGCAGGAGGGTTTATGACATTGCAAACAAGTGTTTATGGTGGTTAAATGATCAAGATTATATTAATGATTGTCAAAAAGAAGTAGATAAACTATTATACAGGAATTGTGTAGAAATGCATGCAACAGTGCAACCAGGTGGCCGATCTCCCAAGCCAATGAGTAGTCCAACATCATCACAGTTAAAATCAGTTTCAGATAGTGTCCAGAACAGTACTTCTTCCTTTCCATCTCACATTAAGGGGAGGAAAAGAGAAAGGGCAGATCAAGGCTCTGATCCTGTTAAGCGAGAAAGATCAACAAAATCTGAGGATGTGGATTCTGGTAATTTGAGGCATGATAACATTTTGAAGACAGAGATTGCCAAAATTACAGAAAAAGGAGGGCTTGTTGATGGTGAAGGGGTTGAAAAATTAGTGCAGCTGATGGTTCCTGATAGAAATGAAAAGAAGATAGATTTAGCTAGCCGGTCATTGCTTGCTGCTGTCATTGCAGCAACAGATAAGTTAGATTGTCTTAGTCAGTTTGTGCAGCTAAGGGGTTTGCCTGTATTTGATGAATGGCTCCAAGAGGTTCATAAGGGGAAGATTGGTGATGGTGATAAATCTGCTGAGGAATTTCTGTTGGTATTGCTTCGGGCACTTGATAAGCTTCCAGTAAATCTTCAGGCTTTACAAACATGCAACATTGGAAAATCTGTGAATCATTTGCGAACTCATAAAAACAGTGAAGTTCAGAGGAAAGCAAGAGGTTTAGTTGATACATGGAAGAAACGTGTTGAAGCTGAAATGAATATAAATGATGCGAAGTCTGGTTCAGGTCCCAATGTCCACTGGCCTGCCAAATCACGTCCTTCTGACGTTAGTCAAGGTGGCAATAGACATTCAGGTGCATCATCAGATGTTGCCATGAAGAGTTCAGTTACACAGCTTTCTGCATCCAAAACTGCCTCAGTGAAGATTGTTCAGGGAGAGAATATTACTAGATCTGCATCAACATCTGCATTTCCAGGGACTGCAAAATCAGTGCCATCACCTGCATCTGCCCCTGCAAACTTAAAAGATGGTCAGCCTCGCATTGTTGCTATCAATGGAGGTTCTGATCTTCCCATGGCAAATGCAAGGGATGAGAAAAGTAGTAGTTCTAGTCAATCTCACAACAACAGTCAATCTTGTTCTAGTGACCATGCTAAAACTGGCGGTCATTCAGTTAAGGAGGATGCCAGAAGCTCTACTGCAATGAGTGCAAATAAGATTTCTGGAGGCTCTTCACGGCATCGAAAATCCATTAATGGATTTTCAGGTTCAACTCCATCTGGAGGTCAAAGGGAAACTGGATCAAGTAGGAATTCCTCCTTGCACAAGAATATAACTTCAGAGAAAATATCTCAACCTGGATTAACAGATAAGGCAGGTGATGGAACTTCTCATGAGGGGAATATTCCCAAGCTGATTGTTAAAATTTCAAACCAAGGTAGAAGTCCTGCACAGAGTGCCAGTGCTGGTTCTTTTGATGATCCTACAATCATGAATAGTCGAGCCTCATCTCCTGTTCTAGAGAAGCATGATCAGTCTGATCACAGCTCAAAGGAAAAAAGTGACCTTTATCGAGTGAATATTGGCTCAGATATTAATACTGAATCTTGGCAGAGTAATGATTTTAAAGACGTGTTGACTGGCTCTGATGAGGGTGATGGATCACCTGTGGCAGTTACCGATGAAGAGCAATGTCGCACTGGCAATGATTGTAAGAAAGCATTTGAAGTATCAAAAGCTGCTTCATCATCATCTGGAAATGAAAACAAAACTGGCAATTTGCAGGATGCTTCTTACAGCTCAATAAATGCTTTAATTGAAGGTGTTAAGTACTCTGAAGCTGATGATGTTGGAATGAATCTTCTTGCTAGTGTGGCTGCTGGAGAGATATTGAAATCCGAATTGTTAACTCCAGCTGGATCTCCAGAAAGAAACACAACTGCTGTTGAACAGTCATGCACAGACAATGGTGTTAAGTCCTCTGAAGAAAATATTGTTCGGGATGAATGCCACTCAAATAATGGTCTAGATGGTGAGCATAAGAATCTGGGTTCTGCAACAGGCGATTTAAGGGCAAATGATGCAAGTGATTCTGATTTTCAAGCATCTGGAGGGAAAGCTGCAAGAGAGCTAAATAAGCATGCAAGTGCATGTGGTATGGATTTGCATCAAGTTGCTGAAACTATTTTGGAAAGCAAAGGAAAATTTAATGAAAAAACTGGACCTACTTCCCCAGGTGGCCTTTGTGAAAATTCCGTACAAGAAGCTAGAGATGGTGACAGAAGCAAGCAGCCCCATGATGTTGTTCAGGGAGTGAATACTGGTGAAATTCTTGATGATAAGGTCAGTTGTGTTGCAGAAGTTGAGGCAGAAGCAGCTGAAAAATTGTCACATACAGCTGTGGAAGTGGATGTACAGAATGATAACTGTACTGCTGAAGGATCAAGTGGTGGTGGACAGATAGTTAAAAAGCCTCCTGCTACTGTTGTGCAGTCTGACTTGGCTAGAGGAAAAGATGAGAATGTACTCCATTCTTCTGGTTATAGTGTTGATAAGGTTCCTAAAGACTTCAATGAACAGGAATCTGAAAAAGCTGATGATGCTGATACTGAGAACCATGTTAGTCAGTCTAAAAATCAGAGAAATGAGTCTGAGAGTGATGCTGTGACGATGCCTGAGAATAGAGGTTTATGTTCAACTGTGACTGGTCTTGTTGCTGAACATGTGGAGGAGAATTTAGAAACGAAGGAGGTTCATGACCATCCTGCCAGAGAGGATCTTCCCAAAGATTCACCTAGTGATCGTTCACAAGAAATGGATAAGCATCTTGATTCTAAAGGACCAAAATTGACTACCACAGAAGTAGACGAGGCTGAGGAGTGCACCTCAACCACTGCAGATGCTTCTTCCATGTCTGCTGCAGCTGTGTCCGATGCGGATGCAAAGGTTGAATTTGATTTAAATGAAGGGCTGAATGCAGATGATGGAAGATGTGAGTTCAACAGCATTGCCACTTCTGGATGTGCACCTGCCGGTCGATTGATCAGTCCTGTGCCATTTCCTGCTTCATCTATGTTATGCGGTATCCCTGCCCCAGTCACTGTGGCATCTGCTGCAAAGGGTTTCTTTGTGCCTCCTGAAGATTTATTGAAAAATAAAGGGGAGATTGGGTGGAAGGGATCTGCTGCCACCAGTGCATTCAGGCCGGCTGAACCTAGGAAAGTTATGGAAATGCCTCTTAGTACATCAACAACCTCTATTCCTGATGCTCCAGCTGGAAAGCAGAGTCGAGCACCATTGGATATTGACTTAAATGTAGCTGATGAAAGAACACTTGATGATATTTCTTGTGCTCGTCACACAGACTCTATATCTCTTGCAACTGATGGTCATGATCCTGCATGCAGTAATAAAGTTTCTCCTGTTCGCTGCTCTGGAGGGCTTGGTCTTGACTTAAACCAAGCGGATGAAGCTTCCGACATGGGCATTTGCTTGAGTAGTAATCATAAACTTGATGTGCCAACTATGCAGGTGAAGTCATCATTTGGTGGTCCACCAAATAGAGAAGTGAATGTCCACAGGGACTTTGATTTGAACAATGGGCCTTCTGTTGATGAAATTACCATTGAATCCTCACTGTTCTCTCAGCATGCCAGGAGCAGTGTGCCATCTCAATTACCTGTTTCTGGGCTTAGAGTGGCTACTGCTGAGCCAGGCAACTTCTCTTGGCTTCCTTCCAGTGGCAACACCTATTCTGCTGTCACAATATCTTCAATTATGCCTGATAGAGGGGATCAGCCCTTTTCAATTGTTGCCCCAAATGGGCCACAAAGGTTGTTGACTCCTGCTGGTGGTGGCAACCCATTTGGACCTGATATTTATAGGGCGCCAGTATTGTCATCTTCTCCTGCAGTGTCATATCCATCTACTCCATTTGAATATCCTGTCTTCCCTTTTAACTCCAGCTTTCCTCTTCCATCAGCTTCTTTTTCTGCTGGATCAACTACTTATGTATATCCAACATCAGCCAATCGGCTTTGCTTCCCTGCAGTAAATTCACAGTTAATGGGACCTGCTGGCACGGTTTCATCTCATTACCCCAGGCCTTATGTTGTTGGTCTTACAGAAGGTAGCAGTAGTGGTAGTGCTGAGACCAGTAGAAAGTGGACAAGGCAGGGTTTAGATCTCAATGCTGGACCTGGGTGTTCAGACGTGGAGGGGAGAGATGAGAGTTCGCCTCTTCCATCAAGGCAACTTTCTGTTGCTAGTTCACAGGCCCTAGCCGAGGAGCAAGCTAGGATCCAGCTTGCGGGTAGTGTTCGTAAGAGGAAGGAGCCTGATAGTGGGTGGGATGGCTACAACCAATCCTCATGGCAATAG 5454 0.4382 MDVPSRIVEPFIGNLENIILTEVTSKLRHYPKEYVQQFMAEAMSFVLRNASNEQLERVRRVIDNAVKKPSLCRESGVKFHSKADRVLQLLTSEAIYPVGDKANQGATVCRQFEDEKCRVEPQIGSCGDSLRCRAETHAFGCGRNSLILHTSPHHPVTLSFSLPALPVLPDPQRGLAGSEGFWCGIRRGFDGTRWGKCKAMHGRGGEKEKGTRHMWKAPTRGDSSLNADVSSSSSSSSSTVKSFLKDGRKISVGECALFKPSEDRPPFIGIIRSLTIGKDKKLKFGVSWLYRPIEVKLSKGVPLEAAPNEIFYTFHKDEIDAESLLHPCKVSFLPKSAEFPSGISSFVCRRVYDIANKCLWWLNDQDYINDCQKEVDKLLYRNCVEMHATVQPGGRSPKPMSSPTSSQLKSVSDSVQNSTSSFPSHIKGRKRERADQGSDPVKRERSTKSEDVDSGNLRHDNILKTEIAKITEKGGLVDGEGVEKLVQLMVPDRNEKKIDLASRSLLAAVIAATDKLDCLSQFVQLRGLPVFDEWLQEVHKGKIGDGDKSAEEFLLVLLRALDKLPVNLQALQTCNIGKSVNHLRTHKNSEVQRKARGLVDTWKKRVEAEMNINDAKSGSGPNVHWPAKSRPSDVSQGGNRHSGASSDVAMKSSVTQLSASKTASVKIVQGENITRSASTSAFPGTAKSVPSPASAPANLKDGQPRIVAINGGSDLPMANARDEKSSSSSQSHNNSQSCSSDHAKTGGHSVKEDARSSTAMSANKISGGSSRHRKSINGFSGSTPSGGQRETGSSRNSSLHKNITSEKISQPGLTDKAGDGTSHEGNIPKLIVKISNQGRSPAQSASAGSFDDPTIMNSRASSPVLEKHDQSDHSSKEKSDLYRVNIGSDINTESWQSNDFKDVLTGSDEGDGSPVAVTDEEQCRTGNDCKKAFEVSKAASSSSGNENKTGNLQDASYSSINALIEGVKYSEADDVGMNLLASVAAGEILKSELLTPAGSPERNTTAVEQSCTDNGVKSSEENIVRDECHSNNGLDGEHKNLGSATGDLRANDASDSDFQASGGKAARELNKHASACGMDLHQVAETILESKGKFNEKTGPTSPGGLCENSVQEARDGDRSKQPHDVVQGVNTGEILDDKVSCVAEVEAEAAEKLSHTAVEVDVQNDNCTAEGSSGGGQIVKKPPATVVQSDLARGKDENVLHSSGYSVDKVPKDFNEQESEKADDADTENHVSQSKNQRNESESDAVTMPENRGLCSTVTGLVAEHVEENLETKEVHDHPAREDLPKDSPSDRSQEMDKHLDSKGPKLTTTEVDEAEECTSTTADASSMSAAAVSDADAKVEFDLNEGLNADDGRCEFNSIATSGCAPAGRLISPVPFPASSMLCGIPAPVTVASAAKGFFVPPEDLLKNKGEIGWKGSAATSAFRPAEPRKVMEMPLSTSTTSIPDAPAGKQSRAPLDIDLNVADERTLDDISCARHTDSISLATDGHDPACSNKVSPVRCSGGLGLDLNQADEASDMGICLSSNHKLDVPTMQVKSSFGGPPNREVNVHRDFDLNNGPSVDEITIESSLFSQHARSSVPSQLPVSGLRVATAEPGNFSWLPSSGNTYSAVTISSIMPDRGDQPFSIVAPNGPQRLLTPAGGGNPFGPDIYRAPVLSSSPAVSYPSTPFEYPVFPFNSSFPLPSASFSAGSTTYVYPTSANRLCFPAVNSQLMGPAGTVSSHYPRPYVVGLTEGSSSGSAETSRKWTRQGLDLNAGPGCSDVEGRDESSPLPSRQLSVASSQALAEEQARIQLAGSVRKRKEPDSGWDGYNQSSWQ 1817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02249 1817 MobiDBLite consensus disorder prediction 996 1065 - -
Spst9g02249 1817 CDD TFIIS_I 542 607 - -
Spst9g02249 1817 Pfam BAH domain 249 356 IPR001025 GO:0003682
Spst9g02249 1817 ProSiteProfiles BAH domain profile. 248 363 IPR001025 GO:0003682
Spst9g02249 1817 MobiDBLite consensus disorder prediction 1734 1817 - -
Spst9g02249 1817 MobiDBLite consensus disorder prediction 223 240 - -
Spst9g02249 1817 MobiDBLite consensus disorder prediction 632 651 - -
Spst9g02249 1817 MobiDBLite consensus disorder prediction 200 240 - -
Spst9g02249 1817 Coils Coil 48 68 - -
Spst9g02249 1817 MobiDBLite consensus disorder prediction 610 651 - -
Spst9g02249 1817 MobiDBLite consensus disorder prediction 395 424 - -
Spst9g02249 1817 Gene3D - 231 474 IPR043151 -
Spst9g02249 1817 MobiDBLite consensus disorder prediction 1267 1314 - -
Spst9g02249 1817 MobiDBLite consensus disorder prediction 837 864 - -
Spst9g02249 1817 MobiDBLite consensus disorder prediction 1734 1750 - -
Spst9g02249 1817 SMART TFS2_5 535 608 IPR003617 GO:0005634
Spst9g02249 1817 MobiDBLite consensus disorder prediction 1093 1128 - -
Spst9g02249 1817 Pfam TFIIS helical bundle-like domain 557 606 IPR017923 -
Spst9g02249 1817 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 517 620 IPR035441 -
Spst9g02249 1817 MobiDBLite consensus disorder prediction 389 456 - -
Spst9g02249 1817 MobiDBLite consensus disorder prediction 997 1018 - -
Spst9g02249 1817 MobiDBLite consensus disorder prediction 837 882 - -
Spst9g02249 1817 MobiDBLite consensus disorder prediction 1212 1238 - -
Spst9g02249 1817 MobiDBLite consensus disorder prediction 1019 1034 - -
Spst9g02249 1817 MobiDBLite consensus disorder prediction 1160 1174 - -
Spst9g02249 1817 MobiDBLite consensus disorder prediction 1315 1329 - -
Spst9g02249 1817 ProSiteProfiles TFIIS N-terminal domain profile. 529 609 IPR017923 -
Spst9g02249 1817 MobiDBLite consensus disorder prediction 1239 1255 - -
Spst9g02249 1817 MobiDBLite consensus disorder prediction 425 456 - -
Spst9g02249 1817 MobiDBLite consensus disorder prediction 865 882 - -
Spst9g02249 1817 MobiDBLite consensus disorder prediction 1153 1329 - -
Spst9g02249 1817 MobiDBLite consensus disorder prediction 752 811 - -
Spst9g02249 1817 MobiDBLite consensus disorder prediction 677 825 - -
Spst9g02249 1817 MobiDBLite consensus disorder prediction 200 216 - -
Spst9g02249 1817 MobiDBLite consensus disorder prediction 720 744 - -
Spst9g02249 1817 SMART BAH_4 248 363 IPR001025 GO:0003682
Spst9g02249 1817 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 481 610 IPR035441 -
Spst9g02249 1817 MobiDBLite consensus disorder prediction 1771 1788 - -
Spst9g02249 1817 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 200 1817 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02249 Spst-Chr9 52297089 52312790 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Spst9g02249 BAH 3.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02249 - - gmx:100788512 2637.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g00103 4 1055025 1061453 Spst9g02249 9 52297089 52312790 ECH
Spst9g02249 9 52297089 52312790 Spst9g02249 9 52297089 52312790 ECH