Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02247 ATGAGTGTAAAACCCTTCTGGGTATTCTTCATTGCCATCTTTTTGTTTCTTCTAATGGCGAATTCAGAAGAAGACGAGGTGATCAAGGCCCTGGTCACATTTATGGAAAAACTGTCACCGGGGTATGTACCAAGAGACCCTACGTGGGGTTGGAACCTTTCATCAGATCCCTGCATTGATAAGTGGCATGGTGTGACGTGCTATTCAGACAACAAAAGCGTTAAGAGTGTGATTCTAGAGAAGTTTAATTTTGGTGGAGGGTTAGACGCCGGTTTTCTTTGCATTGCAAAGTCTCTTCAAATGCTTAGCGTGAAGGACAACAGTTTACATGATTCAATATCAGAGGATATAGGAAAGTGCAAGTTTTTGACTCACTTGTTTTTAAGTGGGAACCAGTTCTCTGGGGACCTTCCTGTTTCTATTGGCAAACTAAGTAACTTAAAGCGGCTTCATATTTCGGACAACCACTTCACTGGAGATCTTCCAAACATGGTTCATGTTTCAAGTTTGATATCCTTCGTTGCTCAAAATAACAACTTCACTGGGGAGATTCCTAGTTTTGACTTCTCCAACCTTGAGGCGTTTAATGTCTCTAACAACAATTTACATGGTCCAGTTCCTGATGTCAGTGGCAAATTCCATGCAGACAGCTTTTCTGGGAATCCTAACTTATGTGGAAAACCACTTTCAAATGCATGTCCACCACCACTACCACCTACTCCTGCACCACCACCTGAAAAGAAGGACCAAAAATGGTTCCCTAATGATTTGTCTATTTATTCTGGTTACTTAGTCCTTGGTTTAATTGTGCTAATTTTCTTGACCTTTAAACTGTTATGTAAGTTCAAGACCAAAGAAAAAGGATTGGATGTTGGAAAGAAGGAAAGGGCACAAGAAACTGTTGGTATTGTTGACAAGGGTAGTGAAATATCCAATTCCAATGGATCAAAGGATGGCACTGGGATTAGATCCGACTATTCATTGACATCTCTGGAAAGTGGGATGACAACATCAGGTCTCGTTCTTCTTTCAAGTCGAACCCTTCGAGGATTGCAATTTGAGGACTTGCTTGGCGCTCCTGCTGAATTGATTAGGAGGGGAAAGCACGGAAGCCTCTACAAGGTGATGCTAGATAATGGGGTGCTGTTGGCAGTGAAGAGGATTAAGGATTGGGGGATTTCAAAGCAAGATTTTGCGAGAAGGATGAATTTGATAGTGCAAGTGAAGCATCCACGCGTATTGCCACCTGTTGCATACTATTGTTCTCAGCAAGAGAAGCTCCTAGCATATGAATATATGCAGAATGGTAGTCTCTTCATGTTTCTCTACGGATCTCAAAGTGGCCACTCTTTTGACTGGGGAAGCAGACTAAATGTTGCTGCTAAGATAGCTGAGGCTTTGGCATATATGCATGAGGTGTTTCTTGAGAATGGAATAGCACATGGTAACTTAAAGTCAAATAACATTTTGTTTGACAAGAATATGGATCCATGCATAAGCGAATATGGCCTAATGTTGGCACAAAATCAAGATCAATTTGTCCTTTCGCACAACAGAGGCATCAAAAGCGAAGATCTAATTGCAGCCACCTTCAAAGCTGATGTATATGCCTTTGGTATGATACTTCTCGAGCTGCTGACAGGGAAAGTAATTAAAAATGATGGATTTGATCTAGTTAAATGGGTGAATTCAGTGGTCAGAGAGGAATGGACCATAGAAGTTTTTGACAAGTCCCTAATCTCACAAGGTGCCTCTGAAGAGAGGATGATGAATTTGTTGCAGGTAGCATTAAAATGCTTAAATCCTTCTCCATATGATAGGCCAATTATGAGCCAAGTTGTTGCGATGACAAATGCTTTGGTAGAGGAGGAAGAAAAATCCTTATCACCTGACACATGA 1899 0.4123 MSVKPFWVFFIAIFLFLLMANSEEDEVIKALVTFMEKLSPGYVPRDPTWGWNLSSDPCIDKWHGVTCYSDNKSVKSVILEKFNFGGGLDAGFLCIAKSLQMLSVKDNSLHDSISEDIGKCKFLTHLFLSGNQFSGDLPVSIGKLSNLKRLHISDNHFTGDLPNMVHVSSLISFVAQNNNFTGEIPSFDFSNLEAFNVSNNNLHGPVPDVSGKFHADSFSGNPNLCGKPLSNACPPPLPPTPAPPPEKKDQKWFPNDLSIYSGYLVLGLIVLIFLTFKLLCKFKTKEKGLDVGKKERAQETVGIVDKGSEISNSNGSKDGTGIRSDYSLTSLESGMTTSGLVLLSSRTLRGLQFEDLLGAPAELIRRGKHGSLYKVMLDNGVLLAVKRIKDWGISKQDFARRMNLIVQVKHPRVLPPVAYYCSQQEKLLAYEYMQNGSLFMFLYGSQSGHSFDWGSRLNVAAKIAEALAYMHEVFLENGIAHGNLKSNNILFDKNMDPCISEYGLMLAQNQDQFVLSHNRGIKSEDLIAATFKADVYAFGMILLELLTGKVIKNDGFDLVKWVNSVVREEWTIEVFDKSLISQGASEERMMNLLQVALKCLNPSPYDRPIMSQVVAMTNALVEEEEKSLSPDT 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02247 632 Pfam Leucine rich repeat N-terminal domain 30 67 IPR013210 -
Spst9g02247 632 ProSiteProfiles Protein kinase domain profile. 358 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst9g02247 632 MobiDBLite consensus disorder prediction 229 248 - -
Spst9g02247 632 SUPERFAMILY Protein kinase-like (PK-like) 362 616 IPR011009 -
Spst9g02247 632 Gene3D Ribonuclease Inhibitor 26 187 IPR032675 -
Spst9g02247 632 SUPERFAMILY L domain-like 46 229 - -
Spst9g02247 632 PANTHER OS05G0588300 PROTEIN 7 621 - -
Spst9g02247 632 Pfam Leucine Rich Repeat 146 165 IPR001611 GO:0005515
Spst9g02247 632 Gene3D Ribonuclease Inhibitor 188 236 IPR032675 -
Spst9g02247 632 FunFam Leucine-rich repeat receptor protein kinase EMS1 89 187 - -
Spst9g02247 632 Gene3D Phosphorylase Kinase; domain 1 347 432 - -
Spst9g02247 632 Pfam Protein kinase domain 364 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst9g02247 632 Gene3D Transferase(Phosphotransferase) domain 1 433 631 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02247 Spst-Chr9 52272276 52274848 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02247 48 614 Receptor kinase-like Gene Family AT1G48480 34.868 3.06e-92 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Spst9g02247 Pkinase 9.7e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02247 - - pvu:PHAVU_009G180700g 1072