LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst9g02241	ATGGTGGCTAGGTCATGCTTGAATTTGTTAGACCTGGTATCAGGGGATATGCTGAATTTCCCTCAAACTCCAAGATCTCTTCCGCGAGTTATGACTGATCCAGTAATATATTCTGATGGAGATGGTAAACAAAGTAATGATGATGATTCAAGTGTTTTCTCAACTGAACACCGTCGCAAGATAATTATAGTGTCAAATTCTCTTCCTCTCAATGCGAAAAGGGATAAAGTATCTGGTAGATGGTGCTTCAGTTATGATGAGGATTCTATTTTTTGGCAGTTAAAGGATGGTCTCTCTCCTGATGCTGATGTTGTGTATGTGGGATCTCTGAAGGTTGATGTTGATGCAAGCGAGCAAGATAAAGTTTCCCTTCAGTTGCTGGAGGAATTCAACTGCTTGCCTACTTTTATTCCTTCAGAACTCTACAAACAATTCCATGATGGATTCTGCAAGCAACATTTGTGGCCTCTATTCCATTACATGTTGCCCATGTATCCAGGCAATCGTCGCTTTGATAGATCACAGTGGCAGGCTTATGTTTCTGCTAACAAGATATTTGCAGATAAAGTCATGGAGGTCCTTAATCCAGAAGATGATTATGTATGGGTTCATGATTATCATCTTATGGTGCTTCCAACATTTCTGCGGAAGCGGTGTAGTCGAGTCAAGCTTGGCTTTTTCCTCCACAGTCCATTTCCTTCATCAGAAATTTATAAAACTCTGCCTGTCAGAGGTGACATTTTGAAAGCACTGCTTAACGCAGATTTAGTTGGTTTTCACACCTTTGATTATGCTCGCCATTTTCTCTCCTGCTGCAGGCGAATGCTAGGCTTGGAACACGAATCCAAGAGGGGTTACATTGGGCTTGAATACTCTGGCCGCACAATATTCATTAAAATTTTGCCTGCTGGGATTCACATGGGTCGACTTCAATCTGCCTTAGATCACCCTTCCTCTTCTAACAAAGTCAGAGAAATCCACGAACAATTTAAGGAGAAAAAGCTTATTCTTGGTGTTGATGATATGGACATATTCAAAGGTGTCAGTTTAAAATTTCTGGCCATAGAACAACTCCTCCAGCAATATCCAGAAATGCAAGGTAAATTGATACTGATCCAAATTTTAAACCCCCCAAGTAGTGCTGACAAAGATATTGAGGATGCAAAGGAGGAAGCCTACATTACTGCCAAAAAGATAAATGAAAGGTTTGGTTTGGAAGGTTATGAACCTATCATCATCATTGATCGCCATGTTCCTTACTATGAGAAGGCAGCCTATTATGCTTTGGCAGAATGTTGCATTGTGAATGCAGTTCGCGATGGTTTGAATTTGGTTCCCTACAAGTACACTGTTTGTAGGCAGGGAAGTTCTAAAATGGATGAAGCCTTGGGAATTGCTCCTGACTCTCCGCGTGCAAGTGCACTTGTTGTTTCTGAGTTTATCGGTTGCTCACCATCTCTTAGTGGCGCAATAAGGGTAAATCCATGGGATATTGATGCAGTAGCTGAAGCACTAAATTTGGCAATCACAATGCCTGATGGAGAGAAGCAGCTTCGACATGAGAAGCACTATAGATACGTTAGTTCTCATGATGTGGCCTACTGGGCTCGAAGTTTTGAGCAAGATCTAGTGTTTTCGTGCAAGGATCACTCTAGGAACCGTTGCTGGGGCATTGGCTTTGGCCTGAACTTCAGAATTTTATCTCTCTCTCCTAGTTTCAGGAGGCTATCCATAGACCACGTTGTCCCTGCATATAAAAGGAGCAGTTGCAGGGCAATCCTTTTGGATTATGATGGTACAGTTGTACCTCAAGCATCCATTGATAAAGCCCCCAATCCTGAAGTCATATCGGTGCTAAATAACCTTTGCAGTGATGTCAACAACACTGTGTTTATTGTTAGTGGCAGGGGAAAAACATCATTGAGTGAATGGTTTGATCAGTGTGAGAATCTTGGTATAGCAGCTGAGCATGGTTATTTTATAAGGTTAGTGATTTATAGTTGGTGGGGTAAGCATGCTAGTTGGCAAATGAGTCATGCAGATACAGATTTTGCGTGGAAAAGGATTGCTGAGCCTGTGTTGAGATCTTATATGGAGGCCACTGACGGCTCCTCTGTAGAGACCAAAGAGAGTGCCTTGGTATGGCATTACCATGATGCCGATCCTGATTTTGGATCTTGGCAAGCCATGGAGCTGTTGGATCACCTTGAAAATGTACTTGCAAATGAGCCTGTTGTTGTAAAAAAGGGACAACATATTATCGAAGTCAAGCCTCAGGGCATTACTAAAGGGTTAGTTGCACAGGAAGTTCTTTCTAGCCTATCCAAGAAGGGTAAATCGCCAGATTTTGTACTGTGCATTGGTGATGATAGGTCTGATGAGGATATGTTTGAGAGTATTTTAAGCAAACCTTACAGTGCTACTTCCTCCTCAGTACCAGAAATCTTTGCATGCACTGTTGGACAAAAACCAAGCAAAGCTAGATATTACCTAGATGACACCAAGGATGTGATGTCATTACTTGAGGGTCTTGGTGCTGCTTCAGTGCCTAAATCAAGATATTCTACAGAAACCCCTTTTGAGAAAAGAGAAGTATGTTTTGAGAATATCGTTTAG	2616	0.4182	MVARSCLNLLDLVSGDMLNFPQTPRSLPRVMTDPVIYSDGDGKQSNDDDSSVFSTEHRRKIIIVSNSLPLNAKRDKVSGRWCFSYDEDSIFWQLKDGLSPDADVVYVGSLKVDVDASEQDKVSLQLLEEFNCLPTFIPSELYKQFHDGFCKQHLWPLFHYMLPMYPGNRRFDRSQWQAYVSANKIFADKVMEVLNPEDDYVWVHDYHLMVLPTFLRKRCSRVKLGFFLHSPFPSSEIYKTLPVRGDILKALLNADLVGFHTFDYARHFLSCCRRMLGLEHESKRGYIGLEYSGRTIFIKILPAGIHMGRLQSALDHPSSSNKVREIHEQFKEKKLILGVDDMDIFKGVSLKFLAIEQLLQQYPEMQGKLILIQILNPPSSADKDIEDAKEEAYITAKKINERFGLEGYEPIIIIDRHVPYYEKAAYYALAECCIVNAVRDGLNLVPYKYTVCRQGSSKMDEALGIAPDSPRASALVVSEFIGCSPSLSGAIRVNPWDIDAVAEALNLAITMPDGEKQLRHEKHYRYVSSHDVAYWARSFEQDLVFSCKDHSRNRCWGIGFGLNFRILSLSPSFRRLSIDHVVPAYKRSSCRAILLDYDGTVVPQASIDKAPNPEVISVLNNLCSDVNNTVFIVSGRGKTSLSEWFDQCENLGIAAEHGYFIRLVIYSWWGKHASWQMSHADTDFAWKRIAEPVLRSYMEATDGSSVETKESALVWHYHDADPDFGSWQAMELLDHLENVLANEPVVVKKGQHIIEVKPQGITKGLVAQEVLSSLSKKGKSPDFVLCIGDDRSDEDMFESILSKPYSATSSSVPEIFACTVGQKPSKARYYLDDTKDVMSLLEGLGAASVPKSRYSTETPFEKREVCFENIV	871

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst9g02241	871	Pfam	Glycosyltransferase family 20	60	543	IPR001830	GO:0003824\|GO:0005992
	Spst9g02241	871	CDD	HAD_TPP	592	838	-	-
	Spst9g02241	871	FunFam	Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6	726	857	-	-
	Spst9g02241	871	NCBIfam	HAD-IIB family hydrolase	593	798	IPR006379	-
	Spst9g02241	871	Gene3D	-	680	759	-	-
	Spst9g02241	871	MobiDBLite	consensus disorder prediction	31	51	-	-
	Spst9g02241	871	FunFam	alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6	53	311	-	-
	Spst9g02241	871	Gene3D	Glycogen Phosphorylase B;	312	528	-	-
	Spst9g02241	871	Gene3D	Glycogen Phosphorylase B;	51	311	-	-
	Spst9g02241	871	NCBIfam	trehalose-phosphatase	591	843	IPR003337	GO:0003824\|GO:0005992
	Spst9g02241	871	Gene3D	-	593	831	IPR023214	-
	Spst9g02241	871	SUPERFAMILY	UDP-Glycosyltransferase/glycogen phosphorylase	60	543	-	-
	Spst9g02241	871	FunFam	alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6	590	713	-	-
	Spst9g02241	871	CDD	GT20_TPS	60	543	IPR001830	GO:0003824\|GO:0005992
	Spst9g02241	871	PANTHER	TREHALOSE-6-PHOSPHATE SYNTHASE	31	846	IPR001830	GO:0003824\|GO:0005992
	Spst9g02241	871	FunFam	Trehalose-6-phosphate synthase 2	680	759	-	-
	Spst9g02241	871	FunFam	Alpha,alpha-trehalose-phosphate synthase	313	528	-	-
	Spst9g02241	871	SUPERFAMILY	HAD-like	591	844	IPR036412	-
	Spst9g02241	871	Pfam	Trehalose-phosphatase	594	834	IPR003337	GO:0003824\|GO:0005992

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst9g02241	Spst-Chr9	51059024	51062088	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst9g02241	1	871	Trehalose Biosynthesis Gene Families	AT1G23870	65.521	0.0	1221

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst9g02241	K16055		-	gmx:100812031	1647.1

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Spst3g02536	3	73430420	73433210	Spst9g02241	9	51059024	51062088	ECH
	Spst9g02241	9	51059024	51062088	Spst9g02241	9	51059024	51062088	ECH
	Spst3g04590	3	97688389	97693787	Spst9g02241	9	51059024	51062088	PCT