Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02231 ATGGCTCCTGAAAAAAATATTCCAATGGAACGACGCCGTTTCCTGTCGTTACCTTCGGTTCGCCCCTGCGTGGCGATATCACCCTCCGTCCTCATAGCCTCGCTTATCACGCTCGCCCAAAACATATGCAGCTTCAGCCCTAATTCCTTTACCACGCAACGCAAAAACGCCAGAGAAACGACGCGTTTCATCGCCATTCTCCTGGCGCTCTTGGAGGAGCTCCACGATCGCGGGTCATTTATACCCGACCCGATCCGTCTCTGCTTGTCGGATCTCCACCTTACCTTTCAGAAGATCCTTCTCTTGATGCATGATTGTTCTCGCGAAGACGCGCGCATCTGGGTGCTGATGAAATCTCAATACATCGTCACGCAGTTCCGAGTTCTCATTCGCGCATTGGCCACCACCCTCCACGTGCTACCCCTTCGCAGCATGGATATAAGCGCCGAAGTGAAAGACCTAGTGGAGTTGGTAACAAAGCAAACCAAGAGAGGGAAAATGGAACTCCACGAAAACGATGAGCGTGAACTGAAACGACTTCGTTTAATTCTCGATCGGCTCGAGAGAGGAATTGAGCCTGACGTGGACACTGTGAAGGTGGTAATCAACTACCTGGAGATAAAAAATTGGAGTTCTTGCAACGAAGAGGTGAAATTTCTCGAAGAAGAATTGAGCTACAATGAAGAAGAGGTTAGTTTGTTGAGCAATTTAATAGGGTTCTTGCATTACTCTAGAGTGGTCCTGTTTGAAACTATTGATTTCCAATGTCTTGCAATGGAACAATCCCGAGCAAAGTGCAGTGTAGAAAAGTTAAGTTGCGTAGTGCCACGAGATTTCCTGTGCCCGATTTCGTTTGAGATAATGACTGATCCTGTAACCATATCCACTGGTCAGACCTACAACCGAACCTCCATTCAGAAATGGCTGAAATCAGGAAACATCAAATGCCCCAAAACACAAGAGAGTCTCGTCAACACGGAACTTCTCCCCAACATAGCGCTCAAAAAGCTTATCCAACAGTTCTGTTACGACAATGGCGTAGCCGTTGTCTTTAATCGGATAAATCTAAACAAAACCAGGACTAGTTCTGTACCCGCCGCGGCACATGCCATTCAGTTTTTGTCTTGGTTTATCTCCCGGAGGCTTGTGTTTGGAACTGAGGAACAGATAACCAAAGCTACCTATGAAATTCGTTTACTCGCGAAGTCCAATGTTTTTTACAAGGTGTGTTTGGTGGAAATGGGAACTGTGCCGCCATTGTTGGATCTTCTCACGGGGCATGGGAGAATCATTCAAGAGAACGCGATTCACGCTCTCATGAAGCTCTCGAAGCATCACAGAGGCCAGGAAGTGATAATCGAGAGTAGAGGGTTGGCGCCGATTCTCAACGTTCTCAGACGAGGGCTTAGCCTAGAAGCGCGCCACGTGGCAGCCGATATCATATTCTACCTTTCCTCCGCGAAGGAGTACCGCAAATTAATAGGCGAAACCCCGAACGCGATTCCAGCGCTGGTGGCGATGGTGAAGGAAGGCACAACGTTTGGAAAAAAGAACAACTCGAATGCGGTGATTGCGATTTTTGCGCTTCTTCTGCGGCGCGAGAACCACGCGAAGGTGGTGGCGGCGGGTGCAGTTCCTGCGCTTGTTAATGTGGTGGCTTCTTCCGATAAACCCGAAGCTGTAACCGATTCGTTAGCGGTTCTGGTGGCGCTGGCGGAGAGTACGGACGGTGCTTATGCGGTGTTTAAAGCGGAAGCGTTGCCTTTGGTGAGTGGGATTTTGCAATCTGCTACATCGCGCGCAGAGGAGGAATACTGTGTTTCCATTTTGCTGGCTCTGTGTGTTAATCTCGGTGAAGAAGCGATTCGGGCTCTGGTGAAGGAAGCTTCGTGTATGCCCTCGCTTTATTCGCTTATAACGGGCGGTACTCCGCACGCGTCGAAGAAAGCGCGTTCACTCGTAAACATTATAGTAGATTTCACCCAGAATGGATTTACTGGTTCCTCCCTCTCACGGCAAAGAATTTTGTATTGTTAG 2037 0.4885 MAPEKNIPMERRRFLSLPSVRPCVAISPSVLIASLITLAQNICSFSPNSFTTQRKNARETTRFIAILLALLEELHDRGSFIPDPIRLCLSDLHLTFQKILLLMHDCSREDARIWVLMKSQYIVTQFRVLIRALATTLHVLPLRSMDISAEVKDLVELVTKQTKRGKMELHENDERELKRLRLILDRLERGIEPDVDTVKVVINYLEIKNWSSCNEEVKFLEEELSYNEEEVSLLSNLIGFLHYSRVVLFETIDFQCLAMEQSRAKCSVEKLSCVVPRDFLCPISFEIMTDPVTISTGQTYNRTSIQKWLKSGNIKCPKTQESLVNTELLPNIALKKLIQQFCYDNGVAVVFNRINLNKTRTSSVPAAAHAIQFLSWFISRRLVFGTEEQITKATYEIRLLAKSNVFYKVCLVEMGTVPPLLDLLTGHGRIIQENAIHALMKLSKHHRGQEVIIESRGLAPILNVLRRGLSLEARHVAADIIFYLSSAKEYRKLIGETPNAIPALVAMVKEGTTFGKKNNSNAVIAIFALLLRRENHAKVVAAGAVPALVNVVASSDKPEAVTDSLAVLVALAESTDGAYAVFKAEALPLVSGILQSATSRAEEEYCVSILLALCVNLGEEAIRALVKEASCMPSLYSLITGGTPHASKKARSLVNIIVDFTQNGFTGSSLSRQRILYC 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02231 678 SUPERFAMILY RING/U-box 268 348 - -
Spst9g02231 678 Gene3D - 380 519 IPR011989 -
Spst9g02231 678 SMART Ubox_2 278 341 IPR003613 GO:0004842|GO:0016567
Spst9g02231 678 Coils Coil 170 190 - -
Spst9g02231 678 FunFam RING-type E3 ubiquitin transferase 352 668 - -
Spst9g02231 678 Pfam U-box domain 275 343 IPR003613 GO:0004842|GO:0016567
Spst9g02231 678 CDD RING-Ubox_PUB 276 328 IPR045210 -
Spst9g02231 678 ProSiteProfiles U-box domain profile. 274 348 IPR003613 GO:0004842|GO:0016567
Spst9g02231 678 SUPERFAMILY ARM repeat 385 657 IPR016024 -
Spst9g02231 678 Gene3D - 520 657 IPR011989 -
Spst9g02231 678 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 415 457 IPR000225 GO:0005515
Spst9g02231 678 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 543 586 IPR000225 GO:0005515
Spst9g02231 678 PANTHER U BOX DOMAIN-CONTAINING 60 655 - -
Spst9g02231 678 SMART arm_5 532 573 IPR000225 GO:0005515
Spst9g02231 678 SMART arm_5 618 659 IPR000225 GO:0005515
Spst9g02231 678 SMART arm_5 445 486 IPR000225 GO:0005515
Spst9g02231 678 SMART arm_5 404 444 IPR000225 GO:0005515
Spst9g02231 678 FunFam RING-type E3 ubiquitin transferase 275 347 - -
Spst9g02231 678 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 275 351 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02231 Spst-Chr9 50677287 50679323 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02231 12 677 U-box Gene Family AT1G60190 38.032 1.73e-149 448
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02231 - - gmx:100810963 886.715