Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02226 ATGAAGAAGAGATTAGCAAGCACCAGCAGTGATTTCTCTAAACTTGATCGCAAAACCATCGAACGAAACCGAAGAATTCAGATGAAATCCCTCTGCCATCAGCTTGGTTCCCTTATTCCTCCCAACCTCAAACCAACCAAATCCAAGTTTATGCTAGGGCAGCAGGACCAGCTCGATCTTGCAGCAAGGTATATAAAACACATGACAGAGAGAATAGAGAAATTGAAGAGGCAGAAGGAGCAAGCCATGTCAAACCAAAGCAGTGATAGAAAAATGATGGATACAAACATTGACACCAAATTGCCAATACTCGAGCTTAGAGACTTGGGATCCGGCATCGAAGTGATGCTGGTGAGTGGGTTAAACAAGACATTCATGTTGTACGAAGTAATTAGCGTGCTTGAGGAAGAAGGTGCTGAAGTTGTCACTGCAAGCTTCTCAACTATAGGCGACAAGATATTTTACGTTGTCCATGCTCAGGTTAAAATATCAAGAGTGGGAGTAGAGACCACGAGGGTAAAGGATAGACTTCAAGAATTTATTGCCCCATTAGAAATCTGGCCGGAAGACATGTGA 576 0.4306 MKKRLASTSSDFSKLDRKTIERNRRIQMKSLCHQLGSLIPPNLKPTKSKFMLGQQDQLDLAARYIKHMTERIEKLKRQKEQAMSNQSSDRKMMDTNIDTKLPILELRDLGSGIEVMLVSGLNKTFMLYEVISVLEEEGAEVVTASFSTIGDKIFYVVHAQVKISRVGVETTRVKDRLQEFIAPLEIWPEDM 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02226 191 Pfam Helix-loop-helix DNA-binding domain 17 68 IPR011598 GO:0046983
Spst9g02226 191 Coils Coil 58 85 - -
Spst9g02226 191 Gene3D - 5 96 IPR036638 GO:0046983
Spst9g02226 191 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 16 86 IPR036638 GO:0046983
Spst9g02226 191 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 11 180 - -
Spst9g02226 191 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 12 68 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02226 Spst-Chr9 50304589 50305875 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02226 7 181 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 34.225 2.06e-25 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst9g02226 HLH 6.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02226 - - gmx:100790403 315.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04581 3 97567571 97568354 Spst9g02226 9 50304589 50305875 ECH
Spst9g02226 9 50304589 50305875 Spst9g02226 9 50304589 50305875 ECH
Spst3g04581 3 97567571 97568354 Spst9g02226 9 50304589 50305875 PCT