Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02200 ATGGGTTTATCTTCTTTGCACGTCTGCATGGATTCATCAGATCATTGGTTGCAGGGCACAATTCACGAGGAGTCTGGAATGGATTCTTCTTCTTCACCCTCTGGGGACATGCTTACATGCTCAAGGCCCATGATAGAGAGGAGGCTAAGACCCCCACATGACCAAGCTCTAAAGTGCCCCAGGTGTGACTCAACCCACACCAAGTTCTGCTACTACAACAACTACAGTCTCTCTCAGCCAAGGTACTTTTGCAAGACCTGCAGAAGGTACTGGACTAAAGGAGGCACTCTAAGGAACATTCCTGTTGGTGGAGGCTGCAGAAAGAACAAAAAAGTCTCTGCCAAAAAATCCAACGACCATCAATTAGTTAACAATCAAATTAGCCAAACACAGCCCCCACCTTCCTCCTACCATCACAACTCCAAAGACCTTCAACTCTCTTTCCCAGATGTACAATTTTCCCACCTCAGCAACTTGCTTGGGACCAATGCAGGGGCACTGGGAAACCCTAGCTTCATGGAGGGCAAGTATGGTATTGGCATGATTGAGAACCCAAGGCCAATTGACTTCATGATGGAGAGCAAGCTGGAAGGCATAATTGGCAATGGTAGTTCTAGGAATTTTGATTTTTTTGGAAATAGTGATATGGGTATGGGTGTTGGGCTAGGTGATATGAATGGTACTACTCAAAGTGGGTTGCCACCAAATTTTCATGGTCTTTGCTCCCCAGCCTTTGGTGGCATGTCTATGTCCCTTGATGGCAACAATACTAGCAATGGTACAAGTAACTACTTAATGGACTCTTGCCAGCGCTTGATGCTGCCATATGATGCCAATGAGGACCATAATGCCTCAATTGATGTGAAGCCAAACCCTAAACAACTATTGTCCCTCGAATGGCAAGACCAGGGTTGCTCTGATGCAGGAAAAGACTCATTTGGGTATCTCAACGGTCCAGGATCATGGACTGGCATGATGAACGGCTATGGATCTTCCACCACAAACCCTTTGGTCTAA 1017 0.4631 MGLSSLHVCMDSSDHWLQGTIHEESGMDSSSSPSGDMLTCSRPMIERRLRPPHDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSAKKSNDHQLVNNQISQTQPPPSSYHHNSKDLQLSFPDVQFSHLSNLLGTNAGALGNPSFMEGKYGIGMIENPRPIDFMMESKLEGIIGNGSSRNFDFFGNSDMGMGVGLGDMNGTTQSGLPPNFHGLCSPAFGGMSMSLDGNNTSNGTSNYLMDSCQRLMLPYDANEDHNASIDVKPNPKQLLSLEWQDQGCSDAGKDSFGYLNGPGSWTGMMNGYGSSTTNPLV 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02200 338 MobiDBLite consensus disorder prediction 108 140 - -
Spst9g02200 338 MobiDBLite consensus disorder prediction 118 140 - -
Spst9g02200 338 Pfam Dof domain, zinc finger 54 111 IPR003851 GO:0003677|GO:0006355
Spst9g02200 338 ProSiteProfiles Zinc finger Dof-type profile. 57 111 IPR003851 GO:0003677|GO:0006355
Spst9g02200 338 ProSitePatterns Zinc finger Dof-type signature. 59 95 IPR003851 GO:0003677|GO:0006355
Spst9g02200 338 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 44 207 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02200 Spst-Chr9 49229921 49231374 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02200 1 197 C2C2-Dof Transcription Factor Family AT5G62940 49.099 1.17e-49 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Spst9g02200 zf-Dof 1.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02200 - - gmx:778107 590.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04567 3 97366994 97368630 Spst9g02200 9 49229921 49231374 PCT