LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst9g02197	ATGCAGGTTGTGAAGATGGGTTTCCGTTACTTTGATCACTGTACTTCTATGGAAGAAACATTTGTTCCCTTTCGTGGGATTAAAAATGACCTCAAAGCAAGAATTGCATGCTACAGACAAGACTGGACCAGTGGATTCCAAGCAGGAATCAGGATCCTTGCTCCAACTACATACATATTTTTTGCTTCTGCAATTCCTGTTATTTCCTTTGGCGAGCAACTCGAGAGAAATACTGATGGATCTCTCACTGCTGTGCAAACTCTTGCATCAACAGCACTCTGTGGTATTATCCACTCAATCATTGGAGGCCAGCCTCTGCTCATACTCGGTGTAGCTGAGCCAACAGTTCTGATGTATACATTCATGTATAACTTTGCTAAGGATCGCAAGGATTTGGGACACAAACTATTCCTACCTTGGACTGGATGGGTGTGTGCTTGGACTGCACTGTTGCTCTTCTTGCTGGCCATTCTTGGCGCATGCTCCATAATCAATAGATTCACACGCATTGCTGGTGAGCTATTTGGTCTTCTAATTGCAATGCTCTTTATGCAGCAGGCTATAAAGGGACTCGTGGAAGAGTTTGGTGCTCCCAAGAACAAGGGAGAAGGCATCAATCAAATTGCTCTTCAATCATCTTGGCTGTTTGGCAATGGAATGTTTGCTTTGGTTTTGTCATTTGGTCTTCTTTTTACTGGTCTACAAAGCCGCAAAGCTAGATCCTGGTGTTACGGGACAGGTTGGCTACGGGGATTTATAGCTGATTATGGAGTCCCTCTAATGGTTCTGATATGGACTGCTGTGTCTTACATACCGGTCAATAAGGTCCCAAGGGGAATCCCCAGGCGACTTTTCAGTCCAAACCCATGGTCTCCTGGTGCATACTCAAATTGGACTGTTGTCAAGGAAATGTTGGATGTGCCCCTCCTATATATTATTGGAGCATTTATACCAGCAACTATGATTGCTGTGCTTTACTACTTTGATCACAGTGTTGCATCACAACTTGCTCAGCAGAAGGAGTTCAATCTAAGAAAACCCTCATCTTATCATTATGACTTGCTGCTCTTGGGATTTTTGACCATATTGTGTGGGCTTATTGGAATCCCTCCTTCCAATGGTGTGATTCCTCAATCTCCAATGCATACAAAGAGCTTAGCTACTCTAAAACATCAGCTTTTACGGAATAAGCTTGTATCTACTGCACGAAAAAGCATGAGGAGGAATGTTAACTTGAGCCAGTTATACGAAAATATGAAAGAAGCATATGATGAAATGCAGACTCCATTGGTTCCCCAAATGCCACCTACTTTGGGGCTGAAAGAACTGAAGGAATCTACCATTGAACTGGCCTCAAGTCATGGATATATTGATGCCCCTGTTGATGAGGTTGTCTTTGATGTGAATAAGGATGTTGATGACCTTTTGCCAGTTGAAGTTAAAGAGCAACGTCTAAGCAATCTAATGCAGGCATTGATGGTTGCAGCTTGTGTTGCTGCTATGCCCCTTTTGAAGAAGATACCGACTTCAGTGCTTTGGGGCTACTTTGCTTTCATGGCCATTGAAAGTTTGCCAGGAAATCAGTTTTGGGAGAGAATATTGTATCTTTTCACTGCCCCAAGTCGAAGATACAAACTGCTGGAAGAGTACCATGCCACCTTTGTTGAGACCGTTCCCTTCAAAACAGTAGCCATGTTTACAGTGTTCCAGACAGTGTACTTGCTTCTCTGCTTCGGCATAACCTGGATACCAATTGCTGGGGTCCTTTTCCCATTGTTAATCATGCTTCTTGTCCCAGTACGGCAGTATTGTCTTCCAAAGTTTTTCAAAGGTGCCCATCTTCAAGAGCTGGATGCAGCAGCATACGAGGAAGCACCTGCCATTGCTTTCAACATGTCCTTTGAAGGTCCAAGTAACCAAGCACCAACAGTAAATATCAGTGGTGGGGAAATTCTTGATGAAGTTATTACGAGGAGTCGTGGAGAGATTCGCCGCATACACAGCCCCAAAACAACAAGTTCAACACCAACTTCAACAGGAGATATAAGACCAGCTAGTAGTCCTCAGATTGGAAGGAGTATCTCAAGCCCTCGAGTGACTGAATTGAGAGGGGAAAGCAGCCTGAGACCAACTGGGAAGGAGATCAAGTTGATGCAAACACCTAGTCCACGATCACCAGCTCTTGAAAAAGTTAACAAAGGTTCACATTCAAGTTAA	2217	0.4375	MQVVKMGFRYFDHCTSMEETFVPFRGIKNDLKARIACYRQDWTSGFQAGIRILAPTTYIFFASAIPVISFGEQLERNTDGSLTAVQTLASTALCGIIHSIIGGQPLLILGVAEPTVLMYTFMYNFAKDRKDLGHKLFLPWTGWVCAWTALLLFLLAILGACSIINRFTRIAGELFGLLIAMLFMQQAIKGLVEEFGAPKNKGEGINQIALQSSWLFGNGMFALVLSFGLLFTGLQSRKARSWCYGTGWLRGFIADYGVPLMVLIWTAVSYIPVNKVPRGIPRRLFSPNPWSPGAYSNWTVVKEMLDVPLLYIIGAFIPATMIAVLYYFDHSVASQLAQQKEFNLRKPSSYHYDLLLLGFLTILCGLIGIPPSNGVIPQSPMHTKSLATLKHQLLRNKLVSTARKSMRRNVNLSQLYENMKEAYDEMQTPLVPQMPPTLGLKELKESTIELASSHGYIDAPVDEVVFDVNKDVDDLLPVEVKEQRLSNLMQALMVAACVAAMPLLKKIPTSVLWGYFAFMAIESLPGNQFWERILYLFTAPSRRYKLLEEYHATFVETVPFKTVAMFTVFQTVYLLLCFGITWIPIAGVLFPLLIMLLVPVRQYCLPKFFKGAHLQELDAAAYEEAPAIAFNMSFEGPSNQAPTVNISGGEILDEVITRSRGEIRRIHSPKTTSSTPTSTGDIRPASSPQIGRSISSPRVTELRGESSLRPTGKEIKLMQTPSPRSPALEKVNKGSHSS	738

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst9g02197	738	Gene3D	Helical hairpin bin	34	76	-	-
	Spst9g02197	738	PANTHER	ANION EXCHANGE PROTEIN	17	626	IPR003020	GO:0005452\|GO:0006820\|GO:0016020
	Spst9g02197	738	MobiDBLite	consensus disorder prediction	662	738	-	-
	Spst9g02197	738	MobiDBLite	consensus disorder prediction	668	702	-	-
	Spst9g02197	738	Pfam	HCO3- transporter family	478	568	IPR011531	GO:0006820\|GO:0016020
	Spst9g02197	738	Pfam	HCO3- transporter family	220	391	IPR011531	GO:0006820\|GO:0016020
	Spst9g02197	738	Pfam	HCO3- transporter family	23	196	IPR011531	GO:0006820\|GO:0016020
	Spst9g02197	738	FunFam	probable boron transporter 2	34	76	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst9g02197	Spst-Chr9	49021223	49026606	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst9g02197	17	713	Antiporters	AT3G62270	74.714	0.0	1058

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst9g02197	K24194		-	gmx:100793554	1339.71

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Spst9g02197	9	49021223	49026606	Spst9g02197	9	49021223	49026606	ECH
	Spst3g04558	3	97222216	97226550	Spst9g02197	9	49021223	49026606	PCT

Showing 1 to 2 of 2 entries