Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02196 ATGACTCCTTTGGGAAATCCTTCATCTAATGGATTCTTGCAAGATTTTCACCATATTGATCAGTTTTACTTCAATGTGACCTCATTCAATAATCCAATAATGCATACCCCAAAGTTTGAAGCTTTTGACAAATGCAACTTTACAGGTTCATCATCTGATTTTGATGTATACGAGTGCAAGCCTTTTGTGGAGAATAGCGTTAGCAAGCATACTCATGTTATGGACAATTTCCTTTATGGAAATCATAACTTGTTCCTCTCTCAAAGGAATATTGAACCCGATATGATGGTTGCAAATCAAATCTTTCTTCCTTTGAGTCCTCAAGAAATCAAGCCCTCCGATTTTGTTGCACCAGATGAAGTTTCATGCATATCCCCGGTGGATAATTACAAAAGAATTGGCGTGAACAAAAATAATAAACCCTATCCAACCACTAGAAGAACATGCAAAGTTCGCAAGAAGTCCAACATAGTAAAGGGGCAGTGGACACTAGAAGAAGATGGGTTATTGATTCAACTGGTGGAACAATACGGGTTGAGGAAGTGGTCTCATATTGCAAAGATGTTGCCTGGGAGAATTGGAAAACAGTGCAGAGAGAGGTGGCATAACCACCTAAGGCCTGACATTAAGAAGGACACATGGAATGGTGAAGAGGATAAAATACTGATCGAAGCTCATTCTAAGATAGGAAATAAATGGGCAGAGATTGCCAAAAGGTTGCCAGGAAGAACTGAAAACTCGATCAAAAACCACTGGAATGCAACCAAGAGAAGGCAATATTCCAAAAGAAAGTGTCGATCAAAGTACCCTAGATGCACTCTTCTACAAGAGTATATCAAGAGCTTGAACTTAGACAAGAACCCCCCTAGAGATTATAGGAGAAAATCTTCTGCTAATTATGCTACTTCCATGAGTACCAAACCCAGCACAAGCAAAGCCACTGCACCAGCTTTGACCCAGACAGCTTTTCAATTTTGTGCCACTGAATGTTTGGCATCAAATTATGATTTCAATGCGGTCCCAGATTTCTTCTTTGGTGAGAATTTGTTTGAAGATGGGTGCTGTATCGATTCTCTTCTAGATGGTGTGTCTTGTTCTCCTCTAAAATTTGAAGGAAATTGGCAATATGATCCTATTATGGAGGGAATAAAGCCTTATGATCATGGAGCAATGGAGTGTGTTCCTGATGTTAATATCCATGAGAATCATGTTGAGACAGAGATGCCACTAGAGATGGTGGAGGTTGAAGTTAAGAAGGAGCTTGATTTGGTTGAGATGATGTATCAGATTAATTAA 1296 0.3943 MTPLGNPSSNGFLQDFHHIDQFYFNVTSFNNPIMHTPKFEAFDKCNFTGSSSDFDVYECKPFVENSVSKHTHVMDNFLYGNHNLFLSQRNIEPDMMVANQIFLPLSPQEIKPSDFVAPDEVSCISPVDNYKRIGVNKNNKPYPTTRRTCKVRKKSNIVKGQWTLEEDGLLIQLVEQYGLRKWSHIAKMLPGRIGKQCRERWHNHLRPDIKKDTWNGEEDKILIEAHSKIGNKWAEIAKRLPGRTENSIKNHWNATKRRQYSKRKCRSKYPRCTLLQEYIKSLNLDKNPPRDYRRKSSANYATSMSTKPSTSKATAPALTQTAFQFCATECLASNYDFNAVPDFFFGENLFEDGCCIDSLLDGVSCSPLKFEGNWQYDPIMEGIKPYDHGAMECVPDVNIHENHVETEMPLEMVEVEVKKELDLVEMMYQIN 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02196 431 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 210 260 IPR017930 -
Spst9g02196 431 MobiDBLite consensus disorder prediction 286 312 - -
Spst9g02196 431 FunFam Transcription factor MYB119 212 276 - -
Spst9g02196 431 CDD SANT 162 205 IPR001005 -
Spst9g02196 431 SUPERFAMILY Homeodomain-like 156 252 IPR009057 -
Spst9g02196 431 PANTHER MYB PROTEIN-RELATED 141 305 - -
Spst9g02196 431 ProSiteProfiles Myb-like domain profile. 206 256 IPR001005 -
Spst9g02196 431 MobiDBLite consensus disorder prediction 296 312 - -
Spst9g02196 431 Pfam Myb-like DNA-binding domain 162 220 - -
Spst9g02196 431 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 154 209 IPR017930 -
Spst9g02196 431 FunFam Transcriptional activator Myb isoform A 158 211 - -
Spst9g02196 431 CDD SANT 213 256 IPR001005 -
Spst9g02196 431 Gene3D - 212 274 - -
Spst9g02196 431 SMART sant 158 207 IPR001005 -
Spst9g02196 431 SMART sant 210 258 IPR001005 -
Spst9g02196 431 Gene3D - 158 210 - -
Spst9g02196 431 ProSiteProfiles Myb-like domain profile. 154 205 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02196 Spst-Chr9 48994491 48996137 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02196 42 363 MYB Transcription Factor Family AT4G18770 50.575 4.77e-96 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst9g02196 Myb_DNA-bind_6 2.5e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02196 K09422 - gmx:102662267 597.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g02196 9 48994491 48996137 Spst3g04556 3 97208650 97210360 PCT