Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02188 ATGGCTCCACCTCCGCCGACTAAGTCTATCTTTGGGAAGGAAGAAGACGTTTCAAAAGCACTTCGTGCTAAAGTTGCTTCTCACCCTCTATTTCCTCACCTCCTCCATGCCTACATCGATTGCCACAAGGTGGGAGCACCACAAGATATGGCACAACTATTTGAAGGAATCAAAGGAGTGCATAGTGGGGTGTGTCAGATATCTGAATCTGAATCTGATCATGGCTTCTTGGGTGCTGATCCCGAGCTTGATGGTTTCATGGGAACGTTTTGCGATCTGTTGGTGAAGTACGAATCGGATCTTTCAAGACCCTTTAACGAGGCAACCATGTTCCTCCGTCACATGGAATCTGAGCTTCACTCCATCTGCAACGATCTTGCTGCTACACACAACACTCCTCCTCAACTTGCAGATATATGGCTGTTCTGGATAGATAAAGTTGCTTTCTTTTGTTTGTGCATTGAGCTGGATCTGAAGATTGTGGATTTGATGGAAAATAAGATTCACAAACGTGGAAAGAGTGGCGGAATTGAATGCAAGAAGATAAATGAAGTTCAAGAGTTGAAAGATAATCTTCTTCATAGATATAGTGATTACATTGTTAATCTGAAGCATGAATTTTCCAGAAAGAAGAAGAAAGAAAAGCTACCAAAAGAAGCAAAGCAAATCTTACATGCATGGTGGAATATTCACTTTAAATGGCCATATCCCACGGATGCTGATAAGGTTGCCTTAGCTGAATGGACTGGTTTGGACCAGAAGCAAGTAAATAATTGGTTTATAAACCAAAGGAAACGCCATTGGAAACCATCAGAGGAAATGAAGGCTGCAATTTTAGATGGAATCTATGGACCCCTACACGAATATGTGAGAACACGTGGCTTGCATTTCAACATAAGAGGGAAGATTTTTCCTTCTCATATAGTTATCAACAAAGGCAAGTAA 945 0.4148 MAPPPPTKSIFGKEEDVSKALRAKVASHPLFPHLLHAYIDCHKVGAPQDMAQLFEGIKGVHSGVCQISESESDHGFLGADPELDGFMGTFCDLLVKYESDLSRPFNEATMFLRHMESELHSICNDLAATHNTPPQLADIWLFWIDKVAFFCLCIELDLKIVDLMENKIHKRGKSGGIECKKINEVQELKDNLLHRYSDYIVNLKHEFSRKKKKEKLPKEAKQILHAWWNIHFKWPYPTDADKVALAEWTGLDQKQVNNWFINQRKRHWKPSEEMKAAILDGIYGPLHEYVRTRGLHFNIRGKIFPSHIVINKGK 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02188 314 CDD homeodomain 222 271 IPR001356 GO:0003677
Spst9g02188 314 Gene3D - 205 278 - -
Spst9g02188 314 ProSiteProfiles 'Homeobox' domain profile. 207 270 IPR001356 GO:0003677
Spst9g02188 314 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 37 276 - -
Spst9g02188 314 SMART KNOX1_2 19 63 IPR005540 GO:0003677|GO:0005634
Spst9g02188 314 Pfam KNOX2 domain 78 123 IPR005541 GO:0003677|GO:0005634
Spst9g02188 314 SMART HOX_1 209 274 IPR001356 GO:0003677
Spst9g02188 314 SMART ELK_2 187 208 IPR005539 GO:0003677
Spst9g02188 314 ProSiteProfiles ELK domain profile. 187 207 IPR005539 GO:0003677
Spst9g02188 314 Pfam Homeobox KN domain 227 266 IPR008422 GO:0003677|GO:0006355
Spst9g02188 314 SUPERFAMILY Homeodomain-like 209 278 IPR009057 -
Spst9g02188 314 SMART KNOX2_2 73 124 IPR005541 GO:0003677|GO:0005634
Spst9g02188 314 Pfam KNOX1 domain 21 57 IPR005540 GO:0003677|GO:0005634
Spst9g02188 314 ProSitePatterns 'Homeobox' domain signature. 245 268 IPR017970 GO:0000981|GO:0006355
Spst9g02188 314 Pfam ELK domain 187 208 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02188 Spst-Chr9 48851166 48858734 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02188 21 284 Homeobox Transcription Factor Family AT1G23380 46.992 4.06e-70 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Spst9g02188 KNOX2 4.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02188 - - gmx:102662019 383.259
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g02188 9 48851166 48858734 Spst9g02188 9 48851166 48858734 ECH