Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02172 ATGCAGTGGCACTCGAGTAACAAGCAGATCGTTGTTCTTTCTATAATTGCAGGTTCCTTGGGTGGCAGGACACACTTGTACTTACATTATGGAAAGCAATACTTGAAAGATTGTTACATTGAAGGGAGTGTGGACTTCATTTTTGGTAATAGTACTTGCACTCTTGGAACATTGTCACATCCATTGCAAGTCCGCGAGGTTTATAACCGCACAGAGCGGAAACTCTCCACGAGAAAAAGCTGGTTATGTATTCCTGAG 258 0.4264 MQWHSSNKQIVVLSIIAGSLGGRTHLYLHYGKQYLKDCYIEGSVDFIFGNSTCTLGTLSHPLQVREVYNRTERKLSTRKSWLCIPE 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02172 86 ProSitePatterns Pectinesterase signature 2. 40 49 IPR033131 -
Spst9g02172 86 SUPERFAMILY Pectin lyase-like 23 54 IPR011050 -
Spst9g02172 86 Gene3D - 15 72 IPR012334 -
Spst9g02172 86 Pfam Pectinesterase 25 55 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02172 Spst-Chr9 48064236 48064719 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02172 18 51 Carbohydrate Esterase AT1G05310 52.941 6.21e-08 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02172 K01051 - tcc:18601567 65.855