Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02166 ATGTCCTTGCAGTTTAATAGGCACTTGAAGCAAACTACTCTCTTGTGTTCTCATAGTCTTCCTAGGGTAACCACCACTTCAACAGGTGCAGCCATATTCAACTATTTTCTTCTCTTTCAGATGGCTTTTATGTCTGGATTCCAGCGTATGCTTCGTCACACCCCACTTCTTCATTCCCATCATGCTTCCATTCGTCTCAGCTCAACTCTCACTTCTCCCAAACTTTTCGTCAGCGGTCTCTCTAGACTGACAACAGATGAAAAACTTAAGGAAGCATTTTCTTCTTTTGGGCAGCTTGTTGAAGCCAAAGTGATAACTGATAGAGCCTCTGGAAGATCAAAGGGATTTGCCTTTGTGACTTATACAACCATAGAAGAAGCAGAAAAGGCGAGAGAAGGAATGAATGCTAAATTTTTGGATGGATGGGTTATATTTGTTGATCCTGCCAAAGCTAGAGAGCCTAGACCTCCTCAGCAATCACAGTCCCACCCCTCTGAATCAGGTTTCACCGTTAACAAAACGATTGGGTGGTGTGGTTGA 540 0.4333 MSLQFNRHLKQTTLLCSHSLPRVTTTSTGAAIFNYFLLFQMAFMSGFQRMLRHTPLLHSHHASIRLSSTLTSPKLFVSGLSRLTTDEKLKEAFSSFGQLVEAKVITDRASGRSKGFAFVTYTTIEEAEKAREGMNAKFLDGWVIFVDPAKAREPRPPQQSQSHPSESGFTVNKTIGWCG 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02166 179 MobiDBLite consensus disorder prediction 155 172 - -
Spst9g02166 179 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 73 151 IPR000504 GO:0003723
Spst9g02166 179 SMART rrm1_1 74 147 IPR000504 GO:0003723
Spst9g02166 179 FunFam RNA binding protein 60 173 - -
Spst9g02166 179 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 75 141 IPR000504 GO:0003723
Spst9g02166 179 MobiDBLite consensus disorder prediction 152 179 - -
Spst9g02166 179 SUPERFAMILY RNA-binding domain, RBD 71 171 IPR035979 GO:0003676
Spst9g02166 179 Gene3D - 62 172 IPR012677 -
Spst9g02166 179 PANTHER NUCLEOLAR PROTEIN 8 60 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02166 Spst-Chr9 47503998 47510540 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02166 75 155 Eukaryotic Initiation Factors Gene Family AT3G16380 39.506 2.96e-13 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02166 - - gmx:100306326 242.662