Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02144 ATGCTCCCTACTGCATCTACATCATCGACTGTTTTATCATCTGATTTTGAAATTCCTTATAATTCCAGTGTTCATGTTGAGCTAGAGGCTTTAATATCTCAGAACGAAAGTGACAAGGATGTTAAGCAGCACCGATATGCATTTCAAACAAGGAGTCCTATTGATGTTCTGGATGATGGCTACCAGTGGAGAAAGTATGGGAAAAAGAATGTGAAAAACAATAGTTTCCCAAGGTGTGCTCATCGAGGGTGCAATGTTAAGAAACAAATCCAACGCCATTCCCAAGATGAGCAGATCGTGGTCACAACCTACGAAGGGACACATACACACCCTGTGGATAAGTCAGTGGAAACCTTCGATCAGATCTTGGGAAACCTACTCATAAGCAACCTACTCAGTAATGTGCCGCCCCCGTTGGAATAG 423 0.4279 MLPTASTSSTVLSSDFEIPYNSSVHVELEALISQNESDKDVKQHRYAFQTRSPIDVLDDGYQWRKYGKKNVKNNSFPRCAHRGCNVKKQIQRHSQDEQIVVTTYEGTHTHPVDKSVETFDQILGNLLISNLLSNVPPPLE 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02144 140 Pfam WRKY DNA -binding domain 58 111 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst9g02144 140 Gene3D WRKY domain 41 113 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst9g02144 140 ProSiteProfiles WRKY domain profile. 52 113 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst9g02144 140 SUPERFAMILY WRKY DNA-binding domain 49 112 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst9g02144 140 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 28 114 IPR044810 GO:0003700
Spst9g02144 140 SMART WRKY_cls 57 112 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02144 Spst-Chr9 46028741 46035258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02144 45 128 WRKY Transcription Factor Family AT5G13080 62.500 5.64e-39 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Spst9g02144 WRKY 3.9e-19 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02144 - - gmx:100796070 187.963