Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02141 ATGGACTGGAATTTGAAAGCACCTTCTTGGGATTTGGTGGATGTGGATAAGGCTACCATACCCAACATAGAATCAATGGAGGAGCATAACAGATTTGGAGTTTATAGAATGAAGGGGGAGTTTTCTGTTGACTTGAAGCTTGGTCATGTGGGGAATTCTGGCACTGAATCAGCATTGGCCAAGTCCAAAGATGTTCCTGCTGGTGCTGGTGTCTCCAAAGTGGCATCCTCACCTTCAGGGTCTTCTAAGAGAGCCAGAGTCATTAACAGCACAACCCTGACTGTGTCATGCCTTGTGGACGGGTGCAATTCAGATCTTAGCAATTGTAGAGATTATCATAGGCGCCACAAGGTGTGTGAACTCCATTCCAAGTCCCCAGAGGTCACAATCGGTGGCCTCAAGCAAAGGTTCTGCCAGCAATGTAGCAGGTTCCATTCGCTGGAGCAATTTGATGAGAGAAAAAGAAGCTGCAGAAAACGTTTAGATGGACACAACAGACGGAGAAGAAAGCCTCAGCCAGAACCTCTCACACGACCTGGTAGTTTTTTATCGAATTACCAAGGTACCCAATTGCTACCCTTCTCAAATCCACACGTATATCCTTCCACTGCCATGATGAGCCCGGTTTGGAGTGGAGGACATGTCACTTCCTCTGCAGATACCAGGTTGCACAACCACCATGGTGGCCACCACCATCAAGTGCACTTGGTTGATAAACAAGACCTTTTTCTGGGATCTTCTCACAAAGAAGGGAAGCAAGTGGCGTTCCTACACGGTAACCATCCCTCCACAGGTGCACTCAGCAACCAAAGCCTTTCCTTTCCCTCTCATTCTGTGTGCCACACGCTTCTCAGGACCAGCCCTCTATCAGAAACTTGCGGAGGGAGAAGCAAAATGTTCTGTGAAGGCTTACCGACGACCAATTCGGTGCATGACACTCCTTGTGCTCTCTCTCTTCTGTCATCATCACAGACGCACACTCCTGGGAATGGTTTGAACCAAATGGTGCAGCCTCCCTCGATGTCCCTGATGCAGCCCTTAGGCCTGAGCCTGCAGGATAACAGCAACTTAGAGTCTGTGGAGCGAGTGTTGGTTCCCAATGGGAGTGACCATTGTTCCTCCATGTATAGCTTGGGTTCTGATGGATCCCACTGCAATGAAGCCCCTCAACTGTTTCCCTTTCAATGGGAATAG 1194 0.4891 MDWNLKAPSWDLVDVDKATIPNIESMEEHNRFGVYRMKGEFSVDLKLGHVGNSGTESALAKSKDVPAGAGVSKVASSPSGSSKRARVINSTTLTVSCLVDGCNSDLSNCRDYHRRHKVCELHSKSPEVTIGGLKQRFCQQCSRFHSLEQFDERKRSCRKRLDGHNRRRRKPQPEPLTRPGSFLSNYQGTQLLPFSNPHVYPSTAMMSPVWSGGHVTSSADTRLHNHHGGHHHQVHLVDKQDLFLGSSHKEGKQVAFLHGNHPSTGALSNQSLSFPSHSVCHTLLRTSPLSETCGGRSKMFCEGLPTTNSVHDTPCALSLLSSSQTHTPGNGLNQMVQPPSMSLMQPLGLSLQDNSNLESVERVLVPNGSDHCSSMYSLGSDGSHCNEAPQLFPFQWE 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02141 397 SUPERFAMILY SBT domain 95 176 IPR036893 GO:0003677|GO:0005634
Spst9g02141 397 Gene3D - 89 158 IPR036893 GO:0003677|GO:0005634
Spst9g02141 397 ProSiteProfiles Zinc finger SBP-type profile. 94 171 IPR004333 GO:0003677
Spst9g02141 397 Pfam SBP domain 97 170 IPR004333 GO:0003677
Spst9g02141 397 MobiDBLite consensus disorder prediction 56 83 - -
Spst9g02141 397 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 62 390 IPR044817 GO:0003677
Spst9g02141 397 FunFam Squamosa promoter-binding-like protein 14 88 158 - -
Spst9g02141 397 MobiDBLite consensus disorder prediction 158 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02141 Spst-Chr9 46012052 46015062 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02141 1 397 SBP-box Gene Family AT5G50670 39.461 8.59e-72 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Spst9g02141 SBP 3.8e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02141 - - gmx:100787407 607.446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g02141 9 46012052 46015062 Spst9g02141 9 46012052 46015062 ECH
Spst3g01139 3 14706117 14708681 Spst9g02141 9 46012052 46015062 PCT