Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02107 ATGTTTCTGGGCCCATATCTTGAGTGTAAATTCGAATTAGGGTTTCAGTCTCAAGTAAATAAAAACAGATCTTCGTTATCTCAGTCTCATTCTCACTGTTGTGCTGCTCTCGTTTGCCTTTTCCACACCGAAGAATTAACATATATAGCAAGCATGGCACTCACATTCTACGACCTTAGCTCTGCCACTGGATTGAAGAAGCTTGATGAGTACCTTCTCCCACGCAGTTACATCACTGGGTACCAAGCTTCAAAGGATGATCTTGCTGTATATTCTGCTCTGCCAGCTGCTCCATCAGCTGAGTACCTGAATGTGTTCAGGTGGTACAAGCACATTGATGCTTTATTGAGAATCTCGGGTGTTTCTGGTGAGGGATCTGGTGTCACTGTTAAGGGGTCTGTTGTTGCTGAGCCTGCTGCTGCTGAGGAGGATGATGATGATGATGTGGATTTGTTTGGTGAAGAGACAGAGGAAGAGAAGAAGGCAGCTGAGGAAAGGGCAGCTGCAGTAAAGGCATCTGGAAAAAAGAAGGAGTCTGGGAAATCATCTGTTCTGTTGGATGTGAAACCATGGGATGATGAAACCGACATGAAGAAGCTTGAGGAAGCAGTGAGATCTGTTAGCATGGAAGGGTTGCTTTGGGGTGCATCCAAACTTGTTCCCGTTGGGTACGGCATCAAGAAACTGCAAATTATGCTTACTATCGTGGATGACCTTGTTTCTGTCGACACTCTTATTGAGGAACATCTCACAGTTGAGCCCATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATTTGTGAAATCCACAGTCGTGGAGATCATGGCAACGAGAGGAAATGCGAATGA 861 0.4483 MFLGPYLECKFELGFQSQVNKNRSSLSQSHSHCCAALVCLFHTEELTYIASMALTFYDLSSATGLKKLDEYLLPRSYITGYQASKDDLAVYSALPAAPSAEYLNVFRWYKHIDALLRISGVSGEGSGVTVKGSVVAEPAAAEEDDDDDVDLFGEETEEEKKAAEERAAAVKASGKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVSMEGLLWGASKLVPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLTVEPINEYVQSCDIVAFNKICEIHSRGDHGNERKCE 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02107 286 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 59 270 - -
Spst9g02107 286 FunFam Elongation factor 1-beta 1 like 175 270 - -
Spst9g02107 286 Coils Coil 153 173 - -
Spst9g02107 286 SUPERFAMILY eEF-1beta-like 178 270 IPR036219 -
Spst9g02107 286 Pfam EF-1 guanine nucleotide exchange domain 183 270 IPR014038 GO:0003746|GO:0006414
Spst9g02107 286 Gene3D - 42 131 - -
Spst9g02107 286 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 145 153 IPR001326 GO:0003746|GO:0005853|GO:0006414
Spst9g02107 286 Gene3D - 174 270 IPR014717 -
Spst9g02107 286 FunFam Elongation factor 1-delta 1 54 129 - -
Spst9g02107 286 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 259 270 IPR001326 GO:0003746|GO:0005853|GO:0006414
Spst9g02107 286 SMART EF1_GNE_2 181 270 IPR014038 GO:0003746|GO:0006414
Spst9g02107 286 CDD EF1B 179 270 IPR014038 GO:0003746|GO:0006414
Spst9g02107 286 SUPERFAMILY GST C-terminal domain-like 44 118 IPR036282 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02107 Spst-Chr9 43344101 43346366 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02107 56 270 Eukaryotic Initiation Factors Gene Family AT2G18110 75.439 3.61e-104 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02107 K03232 - gmx:100777627 318.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g02107 9 43344101 43346366 Spst9g02107 9 43344101 43346366 ECH