Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02102 ATGGTGGCCGGTGCAACAGCAGAACTGCAACTCGCCTTTCTCTTCCCTGGTTTCCCCTCTTGGTCAATCTCAGAGGTGGTCATTAAGAATGGAGAGATGCTTGGTGTTTCACATTTGATAAATAGAAAAGTCCTTTCAAATGGTTGCATTTCTCTTGGAAAAGAGAACTTACAGTTGAAATATAGTGAGGGAGATAGAGCATTTGGTACATCAAGTGAACTCTTCATTGATGAAAGATTGAGAATCGCTTTAGATGGCATCATTGTCACTAGCATGGAAATATTTCGCCCTAAAATTTTGGGTAGTTTGGCTCCAAACACCTTAAAAGTGAAGATAAGGATTACCACAAGATGCTTATGGCTTGACAAAGGGAAGCTGATGGATGCACTCTTCAAATCTGCCCATGCTGCTATTTCAAGCTGCCCTGTAAATAGTCCTCTGGCTCACATAGAAAGAACTGTATCTGAGGTGTTGAGAAAGATGGTGAGGAAGTATAGTGGTAAACGGCCTGAAGTTATTGCCATTGCCATAGAAAATCCTGCATCCGTTCTTGTTGATGAGATAAACACAAAATTGTCTGGTGAAACCCATGTTGGCCTTGGAATATCAACATCAAAAAAAGCATTGGATAGACATGAGAAAAGAAATCAGTCCATCTCACTGCAATTTAGTAGTAAATGTGACATCAAGTGGGAGCATGATGATAGTATTGATAATGCTGGTGGAGATGAGGGTTATTTATCTGAGGAAGACAACACTGCAAGCGAAGCCGAGGGTGATTTATCTGAGTCACGGAATTCAGATGAATTTTGGAAACCATTCATTACATCATTACCAGTTGAGAAACCATTTGATGCTGACAATTCTGAAGAAACGTCTATTTCTGAACCCAAGTCTTCAAAATCAATAAAGAGAAATAAATGGAAAGCTGAGGAAGTTAAGAAGCTGATTGGTATGCGTGAGGAACTACATGACAGATTTCAAGTTGTGAAGGGCAGGATGGCCCTCTGGGAAGAGATATCTCAGAAACTGTTGGCTGATGGGATCAACAGAAGTCCTAGACAGAGTAAATAG 1074 0.405 MVAGATAELQLAFLFPGFPSWSISEVVIKNGEMLGVSHLINRKVLSNGCISLGKENLQLKYSEGDRAFGTSSELFIDERLRIALDGIIVTSMEIFRPKILGSLAPNTLKVKIRITTRCLWLDKGKLMDALFKSAHAAISSCPVNSPLAHIERTVSEVLRKMVRKYSGKRPEVIAIAIENPASVLVDEINTKLSGETHVGLGISTSKKALDRHEKRNQSISLQFSSKCDIKWEHDDSIDNAGGDEGYLSEEDNTASEAEGDLSESRNSDEFWKPFITSLPVEKPFDADNSEETSISEPKSSKSIKRNKWKAEEVKKLIGMREELHDRFQVVKGRMALWEEISQKLLADGINRSPRQSK 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02102 357 MobiDBLite consensus disorder prediction 284 305 - -
Spst9g02102 357 Pfam Myb/SANT-like DNA-binding domain 305 355 IPR044822 -
Spst9g02102 357 MobiDBLite consensus disorder prediction 240 265 - -
Spst9g02102 357 PANTHER RIBONUCLEASE J 25 357 - -
Spst9g02102 357 CDD GT1 306 357 - -
Spst9g02102 357 ProSiteProfiles Myb-like domain profile. 300 357 IPR001005 -
Spst9g02102 357 MobiDBLite consensus disorder prediction 282 305 - -
Spst9g02102 357 Gene3D - 308 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02102 Spst-Chr9 43110925 43113374 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Spst9g02102 Myb_DNA-bind_4 4.3e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02102 - - gmx:100779771 483.796
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g02102 9 43110925 43113374 Spst9g02102 9 43110925 43113374 ECH
Spst3g04447 3 95998818 96007106 Spst9g02102 9 43110925 43113374 PCT