Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02081 ATGGCGGCGGTGGCGGAAGCAAGGAAGGTCCCACGGCCGGGCAAGGGTGGCTACGAAGCCCATGGCTTGAGCGAAGAAGAAGCGCGTGTTCGAGCAATCGCGGAGATAGTTAACTCCATGGTGGACCTCTCACACAAGGGCCAAAAAGTGGACCTCAATGCGCTCAAGTCCGCGGCGTGCCGCAAGTACGGCCTCGCACGCGCACCCAAGCTCGTGGAGATGATCGCCGCGCTCCCCGACGCTGAGCGTGAAACGCTCCTCCCCAAACTCCGCGCCAAACCCGTCCGTACCGCCTCCGGAATCGCTGTCGTCGCCGTCATGTCCAAGCCGCACCGCTGCCCGCACATCGCCACCACTGGGAATATTTGCGTTTACTGCCCTGGCGGTCCCGACTCCGACTTCGAGTACAGCACTCAGTCCTACACCGGTTACGAACCAACCAGTATGCGTGCGATTCGTGCGAGGTATAATCCATATGTCCAAGCAAGGAGCAGGATAGATCAGCTTAAGCGTTTGGGCCATAGCGTAGACAAGGTTGAGTTTATCTTAATGGGCGGTACCTTCATGTCACTTCCAGCTGATTACCGTGATTACTTTATAAGAAATCTTCATGATGCTTTGTCTGGGCACACATCTGCCAATGTGGAAGAGGCAGTGGCTTACTCCGAGCATGGTGCAACCAAGTGTATTGGCATGACAATTGAAACGAGGCCAGATTATTGTCTTGGGCCTCACTTGCGCCAAATGCTTTCTTACGGTTGTACACGATTGGAGATTGGAGTCCAAAGCACCTATGAGGATGTTGCCCGAGACACAAATAGAGGACACACTGTAGCTGCTGTAGCGGATTGTTTTTGCTTAGCTAAAGATGCTGGTTTCAAGGTTGTTGCTCACATGATGCCTGATCTTCCAAATGTTGGTGTTGAGAGGGACATGGAAAGTTTTCGGGAGTTTTTTGAGAGTCCCTTGTTTAGAGCAGATGGGCTAAAAATATATCCTACACTTGTAATTCGTGGAACAGGGCTTTATGAGCTCTGGAAAACTGGCAGGTATAGAAATTATCCACCCGAGCAACTTGTCGACATCATAGCAAGGATCCTTGCATTGGTACCCCCATGGACACGTGTTTATAGAGTTCAGCGGGATATTCCCATGCCTCTGGTTACCTCTGGGGTTGAGAAAGGGAATCTGAGGGAGCTAGCATTAGCTCGAATGGAAGACCTGGGATTGAAATGTAGAGATGTTCGGACCAGGGAAGCTGGAATCCAGGATATTCACCACCAAATTAGGCCAGAGGAGGTGGAGCTTGTTCGACGAGATTATATGGCAAATGAGGGTTGGGAAACATTTCTATCATATGAAGATACACGACAGGATATCCTTGTTGGTTTGTTGCGACTGCGAAAATGTGGCCGCAATACTACATGTCCAGAGCTTATGGGAAAGTGTTCTATTGTTCGTGAACTCCATGTTTATGGAACTGCGGTACCAGTTCATGGACGGGATGCTGACAAGCTACAACACCAGGGTTACGGTACACTTTTAATGGAGGAGGCAGAGCGTATTGCTTGCACAGAACACAGATCAACAAAAATAGCTGTAATTTCAGGGGTGGGTACTCGCCATTATTACAGGAAACTGGGATATGAGCTTGAAGGACCATACATGGTGAAATATCTTGTGAAAAAACACTAG 1695 0.4979 MAAVAEARKVPRPGKGGYEAHGLSEEEARVRAIAEIVNSMVDLSHKGQKVDLNALKSAACRKYGLARAPKLVEMIAALPDAERETLLPKLRAKPVRTASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVAYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDMESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIIARILALVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMEDLGLKCRDVRTREAGIQDIHHQIRPEEVELVRRDYMANEGWETFLSYEDTRQDILVGLLRLRKCGRNTTCPELMGKCSIVRELHVYGTAVPVHGRDADKLQHQGYGTLLMEEAERIACTEHRSTKIAVISGVGTRHYYRKLGYELEGPYMVKYLVKKH 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02081 564 PIRSF HAT_Elp3 18 561 IPR034687 -
Spst9g02081 564 CDD Radical_SAM 110 357 - -
Spst9g02081 564 Pfam Acetyltransferase (GNAT) family 413 549 IPR000182 GO:0016747
Spst9g02081 564 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 369 556 IPR016181 -
Spst9g02081 564 SMART MiaB 103 365 IPR006638 GO:0003824|GO:0051536
Spst9g02081 564 ProSiteProfiles Radical SAM core domain profile. 96 386 IPR007197 GO:0003824|GO:0051536
Spst9g02081 564 Gene3D - 412 561 - -
Spst9g02081 564 SFLD elongater protein-like 49 560 - -
Spst9g02081 564 SFLD ELP3-like 49 560 IPR034687 -
Spst9g02081 564 MobiDBLite consensus disorder prediction 1 21 - -
Spst9g02081 564 FunFam Elongator complex protein 3 409 561 - -
Spst9g02081 564 NCBIfam tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 47 560 IPR034687 -
Spst9g02081 564 SUPERFAMILY Radical SAM enzymes 133 372 - -
Spst9g02081 564 PANTHER HISTONE ACETYLTRANSFERASE-RELATED 13 561 IPR039661 -
Spst9g02081 564 Pfam Radical SAM superfamily 121 309 IPR007197 GO:0003824|GO:0051536
Spst9g02081 564 Pfam Radical_SAM C-terminal domain 327 406 IPR032432 -
Spst9g02081 564 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 410 564 IPR000182 GO:0016747
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Spst9g02081 Radical_SAM 2.3e-17 CL0036
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02081 K07739 - gmx:100818764 1120.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g02081 9 42474644 42478984 Spst9g02081 9 42474644 42478984 ECH