Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02078 ATGGGTGGCAAGGGACAAGGAGTTTCTTATATTCCTCCTGCTTTTAGTAGTATTGTGGCAAACTTGGTTGATAAGAAAATCAATCTCAATGATTCAAGTGGGCAGCAGTGGAAGGTGAAAGTATCAGAAGTTAATGGTTCTTTTGTTTTTGGGATGGGATGGAATGTTTTTTCACTGAGTCACGGGCTTAAAGTTGGATATCTTTTGGTATTCAATTACATCAAGGGTTTTCACTTTGATGTGAAGATCTACGATACTTCTGCATGTGAAAAACTTGGCTTTCCTGTAAGAAGAAATCAGAAGAAAAGAAGTAGGGGCACAAGTGATACACCAGTTAGAGATGGTGTCTTGGTTAGACACGAACCCAATGCCTTAGTTGTCTCCAAGCTTCATGCGCCAAAAATGAAAAGGCAGTGCAGCGAGGTAGAAATAGTAGCACCACAAAAAGCTGAAGAGAGTGGCCCACTTATGCAAATACCAGACCACTGTGAAGATCCATGTTATTCAATAAGCCCAGAATTTGACCAGAGCCATGCTGATGATGGGACCATGAAAATTGAGAACGGAGATTTAAAAGTTTCTAATGTCGATTATAGATCTAATATATTTGAAAATGATGCAACGACATCTGGTAAAGATACTATGATTGAAGGGATATTCAGTACGGAAGCTGCCTTGGATATATCTGAACTTGAAATAGCTGGAAGAAGTACTTCTCGCGATGAGGCAGACACAAGCACATATGACAAGACTTCTAATTTGAAAATTGAAGAAAACAAAGAGAACAAAGCCATCACGTCCAACAGGAAAGCTAAAGGGTGCCAATTTTCTGAGGGCTTAGGTGAAATGTCTAGAATGTTGAAGAAAGAGCTTGTAACTTTCAATGAAATGGAAACAAAAGGGTCGCCCAAGGAAACTAATGAACAGTTGGAATCTGACATATTTAATGAAGATAATGAGAGTGGTTTTAAAACCACTCACCTTCTCTCCTGTGTGGTTCCCCATGATGATGTTTGCCTTAAACTGCCCAAATGCCTGCCTGGGTTTCGCAAGTTGAAAGTGGGTCAGCATAGGAATATGGTAGTGTTTCTTCGGGATCCAGTAAGGAGATTGTGGCCGGTCTTTTACCATGAAAAAACGCATTTAAGATTACTGACACATGGATGGTTAGATTTTAGCAGAGCTAATAACATTCAACCAAGAGATGAGTGTATTTTTGAGGCTGAGGTTGATCCTGAGGGCAAGTCTAAACATACTTTATCAGAAGGTATAAGATTTAATTTGGAAGAAGAAATAGGTGTGTAA 1305 0.3946 MGGKGQGVSYIPPAFSSIVANLVDKKINLNDSSGQQWKVKVSEVNGSFVFGMGWNVFSLSHGLKVGYLLVFNYIKGFHFDVKIYDTSACEKLGFPVRRNQKKRSRGTSDTPVRDGVLVRHEPNALVVSKLHAPKMKRQCSEVEIVAPQKAEESGPLMQIPDHCEDPCYSISPEFDQSHADDGTMKIENGDLKVSNVDYRSNIFENDATTSGKDTMIEGIFSTEAALDISELEIAGRSTSRDEADTSTYDKTSNLKIEENKENKAITSNRKAKGCQFSEGLGEMSRMLKKELVTFNEMETKGSPKETNEQLESDIFNEDNESGFKTTHLLSCVVPHDDVCLKLPKCLPGFRKLKVGQHRNMVVFLRDPVRRLWPVFYHEKTHLRLLTHGWLDFSRANNIQPRDECIFEAEVDPEGKSKHTLSEGIRFNLEEEIGV 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02078 434 SUPERFAMILY DNA-binding pseudobarrel domain 352 408 IPR015300 -
Spst9g02078 434 CDD B3_DNA 361 407 IPR003340 GO:0003677
Spst9g02078 434 CDD B3_DNA 10 85 IPR003340 GO:0003677
Spst9g02078 434 ProSiteProfiles B3 DNA-binding domain profile. 1 87 IPR003340 GO:0003677
Spst9g02078 434 SUPERFAMILY DNA-binding pseudobarrel domain 9 89 IPR015300 -
Spst9g02078 434 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 9 409 IPR044837 -
Spst9g02078 434 Pfam B3 DNA binding domain 10 85 IPR003340 GO:0003677
Spst9g02078 434 Gene3D - 4 89 IPR015300 -
Spst9g02078 434 Gene3D - 327 420 IPR015300 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02078 11 90 B3 DNA Binding Superfamily AT4G01580 30.000 7.39e-09 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Spst9g02078 B3 7e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02078 - - vra:106761496 531.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g02078 9 42389158 42394522 Spst9g02078 9 42389158 42394522 ECH