Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02076 ATGGAGCCCTTTGAATCCGAAACAGTTAGTTCCCTCACCAAGGACGAGTTGGGGGAAACTTCTTCCCCTGTTCACTCCCTCGAACAGGATCCTCAACCCTCAGATCTCAATCACGTTGCCGAGGGTGATGATGCACTTGGTGGGGAGTTTCAGGACAAGTTGGATTTAAAGGATGAGGGTGAGAGTGAGGATAAAGGTTCGAACTTGGAAGATGGGTATGAAAATTTGAGTGATCAAGGTGCTGCACCTGAACGTGGTAAGGGAGAAGTGTGTGATGATGGTGGTGGTGATGATGATGCTGCTGTTGATGGTGATGTTGATGATGATGGCTGGAATGGTGGGGATGAGGGGTGTGATTGGATTGAGAATGTGAATGAGAGTGAGAATGAGAAGGTGGGTGGAGATGTCGAGGGAGTGGAGAACAGGGATGAGAGGAGCAGTGGTAGAACTCAACAGTATCCCTTGAGACCAGAGGCTGAAGACTGTGCTTTTTATCTCAAAACTGGGAGTTGCAAATTTGGATTCAATTGCAAGTTCAATCATCCGCTTAGGAGGAAAAACCAGGCTAAAAATGAAAATGCTGGAGAAAGGGAAGAACAGTCAGAAAGATCAGGGCAGATGGAATGCAAGTATTATTTAAGGTCTGGCGGGTGTAAGTTTGGAAAAGCTTGTAAGTTTAATCACACAAAGGGAAAGTGTTTGTCAGCATCTCCAATTGTAGAGCTTAACTTCCTTGGCCTGCCTATTCGTGTGGGAGAGAAAGAGTGTCACTATTACATGCGTACTGGCTCTTGTAAGTTTGGAGCAAACTGCAAGTTTAATCATCCCGATCCTACATCTGGAGGAGGTGATTCTCCTTCCGGTTATGGTAATGGAAGTTCTGTTTCATTACAAGGTGTATCACAATCATCTATATCCTCATGGTCTTCTACTAGACCAGTAAATGAATCTGCTCCTTTTGTGCCGGTGATAATTTCAGCTAATCCAGGGGTTTCTGCCCAAACTTCTGAATGGAATGGATATCAGGCACCTGTCTATCTACCTGAGAGGAATATGCATCCACCTTCAACATATATCATGAACAACCCAGTTATGGAAACAAATGTTTATTTGCACAGTCAAAAACAAATGGAGGTTGAAGAGTTCCCAGAAAGGCCTGGTGAACCTGAATGCAGCTATTTCTTAAAAACTGGGGATTGCAAGTTTAAATATAATTGTAAGTTTCACCATCCAAAGAATCGAATTGCAAGATTACCTCCATGCAGCCTTAGTGACAAGGGTCTACCTTTGAGACCGGACCAGAATGTGTGCACGTATTACAGCCGGTATGGAATTTGCAAATTTGGACCAGCTTGTAAGTTCGACCACCCACCACCCTCATCAATGGCTGGACTTGATCAACAATCCTCGTACTCAAATTCAGTTAGTGTTGATGTAGCAGAAAATGGAGGCGGCGTTAGTGATGCGAATCAACTGTCTCTATAA 1485 0.4411 MEPFESETVSSLTKDELGETSSPVHSLEQDPQPSDLNHVAEGDDALGGEFQDKLDLKDEGESEDKGSNLEDGYENLSDQGAAPERGKGEVCDDGGGDDDAAVDGDVDDDGWNGGDEGCDWIENVNESENEKVGGDVEGVENRDERSSGRTQQYPLRPEAEDCAFYLKTGSCKFGFNCKFNHPLRRKNQAKNENAGEREEQSERSGQMECKYYLRSGGCKFGKACKFNHTKGKCLSASPIVELNFLGLPIRVGEKECHYYMRTGSCKFGANCKFNHPDPTSGGGDSPSGYGNGSSVSLQGVSQSSISSWSSTRPVNESAPFVPVIISANPGVSAQTSEWNGYQAPVYLPERNMHPPSTYIMNNPVMETNVYLHSQKQMEVEEFPERPGEPECSYFLKTGDCKFKYNCKFHHPKNRIARLPPCSLSDKGLPLRPDQNVCTYYSRYGICKFGPACKFDHPPPSSMAGLDQQSSYSNSVSVDVAENGGGVSDANQLSL 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02076 494 Gene3D - 128 192 - -
Spst9g02076 494 Gene3D - 342 420 - -
Spst9g02076 494 MobiDBLite consensus disorder prediction 45 71 - -
Spst9g02076 494 MobiDBLite consensus disorder prediction 124 149 - -
Spst9g02076 494 ProSiteProfiles Zinc finger C3H1-type profile. 203 231 IPR000571 GO:0046872
Spst9g02076 494 MobiDBLite consensus disorder prediction 95 115 - -
Spst9g02076 494 ProSiteProfiles Zinc finger C3H1-type profile. 250 278 IPR000571 GO:0046872
Spst9g02076 494 Gene3D - 425 476 - -
Spst9g02076 494 Gene3D - 193 280 - -
Spst9g02076 494 SMART c3hfinal6 252 277 IPR000571 GO:0046872
Spst9g02076 494 SMART c3hfinal6 203 230 IPR000571 GO:0046872
Spst9g02076 494 SMART c3hfinal6 431 458 IPR000571 GO:0046872
Spst9g02076 494 SMART c3hfinal6 156 183 IPR000571 GO:0046872
Spst9g02076 494 SMART c3hfinal6 385 412 IPR000571 GO:0046872
Spst9g02076 494 SUPERFAMILY CCCH zinc finger 390 414 IPR036855 GO:0046872
Spst9g02076 494 SUPERFAMILY CCCH zinc finger 207 231 IPR036855 GO:0046872
Spst9g02076 494 SUPERFAMILY CCCH zinc finger 429 456 IPR036855 GO:0046872
Spst9g02076 494 MobiDBLite consensus disorder prediction 1 33 - -
Spst9g02076 494 PANTHER PROTEIN PHOSPHATASE RELATED 60 468 - -
Spst9g02076 494 SUPERFAMILY CCCH zinc finger 251 277 IPR036855 GO:0046872
Spst9g02076 494 ProSiteProfiles Zinc finger C3H1-type profile. 385 413 IPR000571 GO:0046872
Spst9g02076 494 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 253 276 IPR000571 GO:0046872
Spst9g02076 494 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 160 182 IPR000571 GO:0046872
Spst9g02076 494 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 387 412 IPR000571 GO:0046872
Spst9g02076 494 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 208 228 IPR000571 GO:0046872
Spst9g02076 494 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 434 458 IPR000571 GO:0046872
Spst9g02076 494 MobiDBLite consensus disorder prediction 1 151 - -
Spst9g02076 494 ProSiteProfiles Zinc finger C3H1-type profile. 431 459 IPR000571 GO:0046872
Spst9g02076 494 ProSiteProfiles Zinc finger C3H1-type profile. 156 184 IPR000571 GO:0046872
Spst9g02076 494 SUPERFAMILY CCCH zinc finger 155 184 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02076 Spst-Chr9 42292388 42297813 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02076 381 480 C2H2 Transcription Factor Family AT3G02830 47.573 2.32e-22 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Spst9g02076 zf-CCCH 7e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02076 - - gmx:100809906 672.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04476 3 96340837 96344661 Spst9g02076 9 42292388 42297813 ECH
Spst9g02076 9 42292388 42297813 Spst9g02076 9 42292388 42297813 ECH
Spst3g04476 3 96340837 96344661 Spst9g02076 9 42292388 42297813 PCT