Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02067 ATGGAAGGGCGGCGGCATTCAGTTGATATTCCAATTTCTAAAACTCTTGTGGCACTGAGGAGAGTCAGGTCACTGAGGGATCCGTCAACTAATTCTATGAGCAAACTCTCGTCTTTGGTTGATAACGTGCACTGGGAAAACGGTTCTGCTAATGACATTTCCCTGCGGTTTTCTGATGCTGCTCGGCCCTGTGATTCCGACGATAATGCTGCTCTCAGATCAAGGAATTTAGGTTTCAAGGGACAGAGGGAGCAGAATGATGCCGATTTTGTGTTCAACTCAAGGTTGAAACCTAGTGGGATATCTTCCCAGGGTGTCCAACAAGATGGTGAACTAGTTTACTCTAAGCGTAATCTGCAGTGCATTTCTGGAAACAAATCACCAAGTGAAAGTTGTGGGAGCAACCATGGGGCTAAAGGATTGGACTTGGCTTGTATCGTGCTTCCAAGTAATGATTTCAAGGATGGGGATTCATGTTATATAGCAACTGCTAGATCATCTCAATTAGGGATAATAGATTGCTCTAAGTCAGCCAAAAAGTCTCTGCGCAAAAATCAAGTAAAACCATCAGAGTTAGTAGGCAGTATTGATAGCAATGTCAGTCCATGCCCTTCTGGTTATGATGCTTTCTCTCCCTATAGTGGTTCAGTAGGTATAAATCAAGATATTGATGGTTTAGATAATAATGATAATGGTTGTGGAATAAGCTGCTGTTGGTCAAAATCACCAAGGTTTAGAGAATCAAATGTATACGGTGAGATAGAAGACCGTCCTTTGATATCTCACCGTTTTGATGAGACAGATCTTCATGCACACAGAAGCATGAGACACAATGGTGGTGGTATTAGTCCAAATTTGGAAACTCCTAGAAGTTTGTCCATGAAATTTAGGCCTAAATCATTTAGTGATTTGGTGGGACAAAATGTGGTAGTAAGGTCTCTTATGGGGGCTATCTCCAGAGGAAGGATAACATCATTTTATCTCTTCTATGGTCCACGTGGCACCGGCAAGACATCTGCATCTAGGATATTTGCTGCTGCACTGAATTGCCTTTCTGTTGAGGAGCAGAGGCCATGTGGCCTATGCAGAGAATGTATTATATTCTTTTCTGGAAGAAGTAAAGATGTTAAGGAGGTGGATTCTGTGAGAATCAATCGCACCGACCAGGTTAAATCCCTTGTTAAGAATGCTAGCATCCCTCCAGTTTCCTCATGTTTCAAGGTTTTCATTATTGATGAATGCCATCTATTGAATGGGGAGACATGGGCAAGTATTTCAAATAGCCTAGATAACCTTTCTCAACATGTGGTTTTTGTGATGATCACTCCTGATTTGGATAAGCTTCCTCGGTGTGCAGTTTCCCGGGCTCAGAGATATCACTTTCCAAAGGTTAAAGATGCTGACATTGTATGCAGATTACAAAATATTTGCGCCGAAGAAGGTCTTGATTTTGAACAGAATGCTTTGGACTTTATTGCTGCAAAATCCTGTGGTTCTGTTAGGGATGCAGAAATGATGCTTGATCAGATGAGTTTGCTTGGTAAAAAGATCAATATAACTTTAGCTTATGAGCTTACTGGGATCGTTTCTGATGATGAATTACTTGATTTGCTGGATCTAGCTTTGTCATCTGACACTTCAAATACAGTCATCAGAGCACGGGAGCTGATGAGATCTAGAATAGATCCTTTGCAACTTGTATCACAACTGGCAAATCTCATTATGGACATACTTGCAGGGAAATGTGAAAATGGTGGTACAGAAGTTAGAAATAGATTTTATAGGAGATATACCTCGGAAGCTGAGCTGCAGAAACTAAACAATGCATTGAAAATACTTTCTGAAACTGAGAAGCAGTTAAGAATTTCGAAGAATCAAACAACATGGTTCACCGTAGCTCTTCTACAGTTAAGTTCCGTGGATTATCAATCTGTGGATGCAAATGATACCAAATTTAGTCTTAGGGCTGCATGCAATGGAGGTCCAAACTTGGAGCATTTTGCTACAGGTCTGTGTGCTAACATGTCATACAGATTAGCAATGCCGGAGGATCATAAAGGAACATTGGATTCCATTTGGTATAAAGCTACTGAGATGTGCCATTCTAGTCAGCTCAAAACTTTTCTCAGGAAGAAGGGGAGGTTGTCGTCACTTAATGTTGATCGCAGTACAGCTTGTCTTGCTATAGCCGAGTTGGAGTTCCACCATCGCCACCATGTATCCAAGGCTGAGAAGTCATGGAAAATGATTGCAAGCTCCTTGCAGTTCATATTGGGTTGCAACGTGGAGTTGAGGATCACTTATACACCTTGCGCTTTTGATTCTAAGTATGCCAAACCGAAGAGAACATCTTTCAGTATCTTCAGTTGTTCCCGCAGAAATCGGCAACAGAAGTCACTGTCATCTAATGAACAAGGAAGTGAATCAGATTATGCTGATTACACCTCTGAAAATCCCATGATGAAGGACAAAACGTCTACCTCTGATTGTGGAATGGATGCTGTGACAGCTTTGAGGAGTTGTGAAGGGAATTTGCTGAGCTCAAGAGAAAGAATTTTGAACAGATCATTTCAAGAGAGTATGAGGAAATCATGTGCTGAAGTGGATTCTTCTAAGGAAAAGGGATGCAATGGTGCACATCTAGATCCATCAATCCTCGATTCAGATAATGATCACTTTAACTGTTTTCCTAAAACCCTTTGGCTTCAAAAGAAGTTCCGTTCTTCATATTCATCCAAGTTGACTTTTCAAGGCATACAACAGCAGAAAGATTTTGTTTTATCCGTCCCGAAGTGTACATGTTCTGGGACATATACCTATGCAAACGAACCCTGCATTTTTTCCAGTAGTTGTAAGAACTGTTCCAAAGCCTCCTAG 2877 0.4115 MEGRRHSVDIPISKTLVALRRVRSLRDPSTNSMSKLSSLVDNVHWENGSANDISLRFSDAARPCDSDDNAALRSRNLGFKGQREQNDADFVFNSRLKPSGISSQGVQQDGELVYSKRNLQCISGNKSPSESCGSNHGAKGLDLACIVLPSNDFKDGDSCYIATARSSQLGIIDCSKSAKKSLRKNQVKPSELVGSIDSNVSPCPSGYDAFSPYSGSVGINQDIDGLDNNDNGCGISCCWSKSPRFRESNVYGEIEDRPLISHRFDETDLHAHRSMRHNGGGISPNLETPRSLSMKFRPKSFSDLVGQNVVVRSLMGAISRGRITSFYLFYGPRGTGKTSASRIFAAALNCLSVEEQRPCGLCRECIIFFSGRSKDVKEVDSVRINRTDQVKSLVKNASIPPVSSCFKVFIIDECHLLNGETWASISNSLDNLSQHVVFVMITPDLDKLPRCAVSRAQRYHFPKVKDADIVCRLQNICAEEGLDFEQNALDFIAAKSCGSVRDAEMMLDQMSLLGKKINITLAYELTGIVSDDELLDLLDLALSSDTSNTVIRARELMRSRIDPLQLVSQLANLIMDILAGKCENGGTEVRNRFYRRYTSEAELQKLNNALKILSETEKQLRISKNQTTWFTVALLQLSSVDYQSVDANDTKFSLRAACNGGPNLEHFATGLCANMSYRLAMPEDHKGTLDSIWYKATEMCHSSQLKTFLRKKGRLSSLNVDRSTACLAIAELEFHHRHHVSKAEKSWKMIASSLQFILGCNVELRITYTPCAFDSKYAKPKRTSFSIFSCSRRNRQQKSLSSNEQGSESDYADYTSENPMMKDKTSTSDCGMDAVTALRSCEGNLLSSRERILNRSFQESMRKSCAEVDSSKEKGCNGAHLDPSILDSDNDHFNCFPKTLWLQKKFRSSYSSKLTFQGIQQQKDFVLSVPKCTCSGTYTYANEPCIFSSSCKNCSKAS 958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02067 958 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 293 711 - -
Spst9g02067 958 FunFam Protein STICHEL-like 1 isoform C 528 641 - -
Spst9g02067 958 NCBIfam DNA polymerase III subunit gamma/tau 291 637 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Spst9g02067 958 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 293 513 IPR027417 -
Spst9g02067 958 MobiDBLite consensus disorder prediction 796 826 - -
Spst9g02067 958 Gene3D - 465 527 - -
Spst9g02067 958 CDD HLD_clamp_pol_III_gamma_tau 464 527 IPR045085 -
Spst9g02067 958 Gene3D - 528 641 - -
Spst9g02067 958 SUPERFAMILY post-AAA+ oligomerization domain-like 534 636 IPR008921 GO:0003677|GO:0006260
Spst9g02067 958 Coils Coil 603 626 - -
Spst9g02067 958 FunFam DNA polymerase III subunit gamma/tau 465 527 - -
Spst9g02067 958 Gene3D - 285 462 IPR027417 -
Spst9g02067 958 SMART AAA_5 323 466 IPR003593 GO:0016887
Spst9g02067 958 Pfam DNA polymerase III, delta subunit 307 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02067 Spst-Chr9 41924865 41928820 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02067 282 529 Core DNA Replication Machinery Family AT1G21690 26.190 1.87e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02067 - - gmx:100812040 1608.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g02067 9 41924865 41928820 Spst9g02067 9 41924865 41928820 ECH
Spst3g04479 3 96374004 96381226 Spst9g02067 9 41924865 41928820 PCT