Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02065 ATGCCAAGCACTCTACCCTCTTTGCTTTTCTTGCTCGTCTCCCTCCTCACTCCTACCCTCATTTTCTCTTCACCATTTCAAAACCCTGAAGAGGTCGTTCAAGAGGTTAACAGGAAAATCAATGCCTCCATGGCTAGGCCTAGGAGGAGCTTGGGCTACCTGTCATGTGGCAGCGGCAACCCCATTGATGACTGTTGGCGGTGCGACCCGAATTGGGAGCAGAACCGGCAAAGCCTAGCCGACTGCGCAATCGGGTTCGGCAAGAACGCCATCGGCGGAAGGGACGGGAAGATCTATGTGGTGGACGACGCCGGCGACGACGACCCGGTAAACCCGAAGCCAGGCACGCTCCGGCACGCCGTGATCCAAGACGAGCCCCTCTGGATCATCTTCGCACGCGACATGGTGATCCAGCTGAAGGAGGAGCTAATCATGAACTCTTTCAAGACCATCGACGGCCGCGGCGCCAGTGTGCACATCGCCGGCGGCCCCTGCATCACCGTGCAGTACGTCACGAACATCATCATCCACGGCATCCACGTGCACGACTGCAAGCAGGGAGGGAACGCCATGGTGCGCGCCTCCCCACGGCACTACGGGTGGAGAACCGTGTCGGACGGCGACGGCGTGTCCATCTTCGGAGGAAGTCACGTGTGGGTCGACCATTGCTCGTTGTCGAACTGCAACGATGGGTTGATCGACGCCATCCATGGGTCCACTGCCATTACCATCTCCAACAATTACATGACGCATCATGATAAGGTCATGCTGTTGGGTCACAGCGACTCTTACACCCCGGACAAGGACATGCAGGTCACTATTGCTTTCAACCACTTTGGTGAAGGCCTTGTTCAAAGGATGCCAAGGTGCAGGTTTGGGTATTTCCATGTGGTGAACAATGATTATACTCACTGGGAAATGTATGCCATTGGGGGGAGTGCTAATCCAACTATTAACAGCCAAGGCAACAGATTTGTTGCACCAGATGACAGATTCAGCAAAGAGGTGACAAAGCATGAAGATGCAGCAGAGATTGAATGGCAGAGTTGGAATTGGAGATCAGAAGGGGACTTGTTCGTAAACGGTGCATTTTTCACTGCATCGGGTGCTGGAGCCTCCTCAAGCTATGCAAGGGCTTCTAGCCTAAATGCAAGACCATCTTCACTTGTTGGTTCCATTACAACAGCTGCTGGTGCACTCACCTGCAAAAAAGTTGCTCATGATTACAACCTCCACCTGTTACTCTTAGAACCTAGTCAGTTGAAGAATCTCGACGTTCCAAGAGAAAAACAAGTGAAGAAGAGTTGA 1308 0.5306 MPSTLPSLLFLLVSLLTPTLIFSSPFQNPEEVVQEVNRKINASMARPRRSLGYLSCGSGNPIDDCWRCDPNWEQNRQSLADCAIGFGKNAIGGRDGKIYVVDDAGDDDPVNPKPGTLRHAVIQDEPLWIIFARDMVIQLKEELIMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGIHVHDCKQGGNAMVRASPRHYGWRTVSDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTPDKDMQVTIAFNHFGEGLVQRMPRCRFGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPDDRFSKEVTKHEDAAEIEWQSWNWRSEGDLFVNGAFFTASGAGASSSYARASSLNARPSSLVGSITTAAGALTCKKVAHDYNLHLLLLEPSQLKNLDVPREKQVKKS 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02065 435 PANTHER PECTATE LYASE 18-RELATED 26 404 IPR045032 GO:0030570
Spst9g02065 435 Pfam Pectate lyase 145 325 IPR002022 -
Spst9g02065 435 SUPERFAMILY Pectin lyase-like 50 402 IPR011050 -
Spst9g02065 435 SMART amb_all 134 331 IPR002022 -
Spst9g02065 435 FunFam Pectate lyase 59 401 - -
Spst9g02065 435 Gene3D - 59 401 IPR012334 -
Spst9g02065 435 PRINTS Pollen allergen Amb family signature 82 99 IPR018082 -
Spst9g02065 435 PRINTS Pollen allergen Amb family signature 308 327 IPR018082 -
Spst9g02065 435 PRINTS Pollen allergen Amb family signature 286 305 IPR018082 -
Spst9g02065 435 PRINTS Pollen allergen Amb family signature 350 374 IPR018082 -
Spst9g02065 435 PRINTS Pollen allergen Amb family signature 142 158 IPR018082 -
Spst9g02065 435 PRINTS Pollen allergen Amb family signature 206 227 IPR018082 -
Spst9g02065 435 PRINTS Pollen allergen Amb family signature 106 131 IPR018082 -
Spst9g02065 435 PRINTS Pollen allergen Amb family signature 379 402 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02065 Spst-Chr9 41745464 41748204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02065 3 407 Polysaccharide Lyase AT5G63180 78.870 0.0 655
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02065 K01728 - gmx:100814679 741.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g02065 9 41745464 41748204 Spst9g02065 9 41745464 41748204 ECH
Spst1g01938 1 27605302 27608361 Spst9g02065 9 41745464 41748204 ECH