Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02046 ATGTCTATCACTGCCACTGCCTTCAAGTCCCTCACCATGGCTGATTCCTGCCTCCTCTCTTCTCCCTCCTCTCTCTTCCACAACATAATCAAACCCTCTATCTTCTCCCCTCCCTCCAAACCCCTCACACTCCAATTCTCATGCCTCAACTCCTCCCCCTCGCTCTCTCTCTCCCTCGCCGCACGAACCCATCGTTCCCCTGTTTTCACGCACGTCGCCCAAACCTCCGATTGGGCCCAGCAAGAGGACAACACCGCCACCATCCAGGACCAAGAAGAACGACAAGAGCAGGGTGGTCTCCTTGATTGGGAGCCCAACGGTGAAGGCGCAGAAGATGAGGGTTTCGTGGAACCTCCGGAAGAGGCCAAACTCTTCGTCGGGAACTTGCCTTACGACGTTGATAGCCAGAAATTGGCCATTCTTTTTGAACAAGCCGGAACCGTTGAAATTGCCGAGGTGATTTATAACAGGGATACTGACCGTAGTCGCGGATTTGGGTTTGTGACGATGAGTACTGTTGAAGAAGCTGAGAACGCTGTGGAGAAATTCAATAGCTATGATTACGATGGAAGACTGCTGACTGTTAACAAGGCTTCTCCGAGAGGAGCTCAGCCTGAACGTCCTCCTCGTCGTTCCTTTGAGCCTTCCTTTACAGCCTATGTTGGTAATTTGCCATGGGATATTGATAATACCAGGTTGGAGCAAGTTTTCAGTGAGCATGGTAAGGTTGTGAGTGCTAGGATAGTCTATGACAGGGAGAGTGGTCGTTCACGTGGCTTTGGCTTTGTCACAATGTCTGAAGAGTCGGAAATGAATGATGCTGTTGCTGCTCTTGATGGTCAGAATTTGGACGGAAGAACAATTAGGGTGAATGTTGCTGAGGACAGACCGCCCAGGCGTAGCTCATTTTGA 912 0.5066 MSITATAFKSLTMADSCLLSSPSSLFHNIIKPSIFSPPSKPLTLQFSCLNSSPSLSLSLAARTHRSPVFTHVAQTSDWAQQEDNTATIQDQEERQEQGGLLDWEPNGEGAEDEGFVEPPEEAKLFVGNLPYDVDSQKLAILFEQAGTVEIAEVIYNRDTDRSRGFGFVTMSTVEEAENAVEKFNSYDYDGRLLTVNKASPRGAQPERPPRRSFEPSFTAYVGNLPWDIDNTRLEQVFSEHGKVVSARIVYDRESGRSRGFGFVTMSEESEMNDAVAALDGQNLDGRTIRVNVAEDRPPRRSSF 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02046 303 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 220 289 IPR000504 GO:0003723
Spst9g02046 303 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 193 IPR000504 GO:0003723
Spst9g02046 303 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 217 295 IPR000504 GO:0003723
Spst9g02046 303 FunFam 31 kDa ribonucleoprotein, chloroplastic 206 302 - -
Spst9g02046 303 CDD RRM2_NsCP33_like 220 293 - -
Spst9g02046 303 Gene3D - 70 205 IPR012677 -
Spst9g02046 303 MobiDBLite consensus disorder prediction 79 114 - -
Spst9g02046 303 SUPERFAMILY RNA-binding domain, RBD 118 211 IPR035979 GO:0003676
Spst9g02046 303 Gene3D - 206 302 IPR012677 -
Spst9g02046 303 PANTHER OS02G0815200 PROTEIN 29 300 - -
Spst9g02046 303 SMART rrm1_1 218 291 IPR000504 GO:0003723
Spst9g02046 303 SMART rrm1_1 123 196 IPR000504 GO:0003723
Spst9g02046 303 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 122 200 IPR000504 GO:0003723
Spst9g02046 303 SUPERFAMILY RNA-binding domain, RBD 206 301 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02046 Spst-Chr9 41031104 41033246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02046 122 300 Eukaryotic Initiation Factors Gene Family AT3G16380 30.168 2.66e-13 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02046 - - gmx:100810381 458.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04487 3 96447764 96450099 Spst9g02046 9 41031104 41033246 ECH
Spst9g02046 9 41031104 41033246 Spst9g02046 9 41031104 41033246 ECH
Spst3g04487 3 96447764 96450099 Spst9g02046 9 41031104 41033246 PCT