Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02024 ATGAGTGCTCCCATGGACACAGAGCTCACAATCGACGAAAATGGCGCTGCTTCCCAACACTCACTTCCCGAGGACAAAGTTCTTGTCCCTGTCGAGGTAACCCTAAAACCTTCCAGCACAGCTAAAATCGAAGATGTTCGTTCAGCCGTTGAAGGGATGCTTGAAAAGAGGAGTTTGAGCTATATCAATGGACCCATTCCGGTGCCTCTTGATGAGGCGTTTCTCGCAGATAACGTGCAAAGAATTTGCGTTTGCGGATGTGATACCGATGAAGGGATGCACACTGATAATGTTCTTTTGTTCTGGCAAGTGAAGCCTATTGTACATGTTTTTCAGCTTAGCGAGGAAGGTCCATGTGAGGATATAAGCTCTGATGGCCAGTCTTCCAGCTTCAATGAATGGATTCTGCCTGCAAAAGAATTTGATGGCATGTGGGAAAGCTTAATATATGAATCTGGTCTAAAGCAAAGGTTATTACGATATGCGGCTAGTGCTTTGCTCTTTACTGAAAAAGGGGTTGATCCATTCCTTGTTTCATGGAACCGCATAATTTTGTTACATGGACCTCCTGGGACTGGAAAGACATCTTTATGTAAAGCATTAGCTCAAAAATTAGCAATTCGATTCAACTCAAGATACCCTCAGTCCCAGCTTGTTGAAGTGAATGCACATTCTTTGTTCAGTAAATGGTTCTCTGAAAGTGGCAAGCTGTGTTTCCTTCAAGTTAATATCAAGTATCCGGTACTAGTGTTGGGTAGGCAGGTAGCGAAACTTTTCCAAAAGATTCAAGAAATGGTAGAGGAAGAAAGCAATCTCGTATTTGTATTGATTGATGAAGTGGAAAGCCTTGCTGCTGCTAGAAAAGCTGCCCTATCTGGTTCTGAACCATCTGATTCTATTAGGGTAGTCAATGCATTACTAACTCAGATGGACAAGTTAAAATCATCTCCCAATGTGATAATTCTAACCACTTCCAACATAACTGCAGCTATTGATATTGCTTTTGTTGATCGAGCTGATATCAAAGCATATGTTGGTCCCCCAACGCTTCAAGCTCGGTATGAAATATTAAGGTCCTGCTTGCAGGAACTGATGCGTACAGGGATCTTGACTAGTTTACAGGGTTGCAAGAATGTCATGCTTCCTAATTACGCTTGTGCAAAGGAGAGGTTGAACGCTCTTGATTTTCACGAAGGTGCTACATTCATGCAACTGTGCAAGCACTTACTGGAAACCGCAGAGGCATGTGAGGGAATGAGTGGAAGGGCTTTGAGAAAGCTTCCATTTTTGGCACATGCTGCACTTTCAAATCCTTTTGATTGCAACCCTATTAAGTTCTTATGTACAATGGTAGAAACTGCAAAGAGGGAGCGTTCTGAGCTTCCTGACTAA 1392 0.4274 MSAPMDTELTIDENGAASQHSLPEDKVLVPVEVTLKPSSTAKIEDVRSAVEGMLEKRSLSYINGPIPVPLDEAFLADNVQRICVCGCDTDEGMHTDNVLLFWQVKPIVHVFQLSEEGPCEDISSDGQSSSFNEWILPAKEFDGMWESLIYESGLKQRLLRYAASALLFTEKGVDPFLVSWNRIILLHGPPGTGKTSLCKALAQKLAIRFNSRYPQSQLVEVNAHSLFSKWFSESGKLCFLQVNIKYPVLVLGRQVAKLFQKIQEMVEEESNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELMRTGILTSLQGCKNVMLPNYACAKERLNALDFHEGATFMQLCKHLLETAEACEGMSGRALRKLPFLAHAALSNPFDCNPIKFLCTMVETAKRERSELPD 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02024 463 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 144 429 IPR027417 -
Spst9g02024 463 ProSitePatterns AAA-protein family signature. 319 338 IPR003960 GO:0005524|GO:0016887
Spst9g02024 463 PANTHER PACHYTENE CHECKPOINT PROTEIN 2 18 460 IPR044539 -
Spst9g02024 463 Gene3D - 123 365 IPR027417 -
Spst9g02024 463 FunFam pachytene checkpoint protein 2 homolog 124 363 - -
Spst9g02024 463 CDD RecA-like_Pch2-like 130 345 - -
Spst9g02024 463 SMART AAA_5 180 349 IPR003593 GO:0016887
Spst9g02024 463 Pfam ATPase family associated with various cellular activities (AAA) 184 346 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02024 Spst-Chr9 39369579 39374556 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02024 184 415 Calmodulin-binding Proteins AT3G56690 26.271 7.08e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02024 K22399 - gmx:100812167 821.617