Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g02009 ATGGCAGTTTCTTCGGCAACAGCTTCTTCAAAACTCATACTATTCCCACATTCATCATCTTCTTCTTCATCATCTTCTCTAAATTCTACACCTTTCCGCTCCACCTCCACCCACAAACTAACCCCTCTCTCCTCCTCCTTCCTCCACCCCTCCACCATCCTCCGCCGCATCCCCTCCACCACCTCCCCCCGCCGCCCATTCACCGTCCGCGCCGCGCGCGGCAAGTTCGAGCGCAAGAAGCCCCACGTGAACATCGGCACCATCGGTCACGTGGACCACGGCAAGACCACCCTCACCGCCGCCCTCACAATGGCCCTCGCCTCACTCGGTAACAGCGCCCCCAAAAAGTACGACGAAATCGACGCCGCCCCGGAGGAGCGCGCTCGCGGCATCACCATCAACACCGCTACCGTCGAATACGAAACTGAAAACCGTCACTACGCCCACGTGGACTGCCCCGGCCACGCGGACTACGTTAAGAACATGATCACCGGCGCCGCCCAGATGGACGGCGCCATACTCGTCGTCTCCGGCGCCGACGGCCCCATGCCCCAGACCAAAGAACACATCTTGTTAGCAAAACAAGTTGGCGTCCCCAACATGGTCGTCTTCCTCAACAAACAGGACCAAGTCGACGACGAAGAGCTTCTCCAATTGGTCGAACTCGAAGTCCGGGAGCTTCTCTCCTCGTACGAGTTCCCCGGTGACGACATCCCCATCGTCTCTGGTTCCGCGCTCTTAGCCCTGGAAGCTCTTATGGCGAACCCTGCAATCAAACGCGGGGAAAACGAATGGGTTGATAAAATCTACCAACTCATGGACGAAGTCGACAACTACATTCCCATTCCGCAGCGCCAAACCGATCTCCCTTTCCTTCTGGCGGTGGAGGACGTTTTCTCAATAACCGGGCGTGGCACAGTGGCGACGGGGCGCGTGGAGCGTGGGACGATTAAAGTGGGTGAAACCGTTGACCTCGTAGGTTTGAGGGAAACGAGGAACACGACGGTGACCGGCGTGGAGATGTTCCAGAAGATTCTAGACGAGGCCTTGGCGGGGGACAACGTGGGGCTGTTGCTGAGAGGGGTTCAGAAGGTGGACATTCAGAGAGGGATGGTTCTGGCGAAGCCTGGGACCATTACTCCGCACACCAAGTTTGTGGCCATTGTTTATGTTTTGAAGAAGGAGGAAGGTGGGAGGCACTCGCCGTTCTTTGCAGGGTACAGGCCTCAGTTTTACATGAGAACCACCGACGTGACGGGGAAGGTCACCTCCATCATGAACGATAAGGACGAGGAGTCCAAGATGGTTATGCCTGGTGACCGTGTTAAGATGGTTGTCGAGCTCATTGTCCCTGTGGCTTGCGAACAGGGAATGAGGTTCGCCATTAGAGAAGGAGGGAAGACCGTTGGTGCTGGTGTTATCCAATCCATCGTTGAGTGA 1440 0.5667 MAVSSATASSKLILFPHSSSSSSSSSLNSTPFRSTSTHKLTPLSSSFLHPSTILRRIPSTTSPRRPFTVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDIPIVSGSALLALEALMANPAIKRGENEWVDKIYQLMDEVDNYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLRETRNTTVTGVEMFQKILDEALAGDNVGLLLRGVQKVDIQRGMVLAKPGTITPHTKFVAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTSIMNDKDEESKMVMPGDRVKMVVELIVPVACEQGMRFAIREGGKTVGAGVIQSIVE 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g02009 479 Pfam Elongation factor Tu C-terminal domain 378 477 IPR004160 -
Spst9g02009 479 NCBIfam small GTP-binding protein domain 83 215 IPR005225 GO:0005525
Spst9g02009 479 NCBIfam elongation factor Tu 72 479 IPR004541 GO:0003746|GO:0005525|GO:0006414
Spst9g02009 479 MobiDBLite consensus disorder prediction 17 43 - -
Spst9g02009 479 CDD EF_Tu 81 283 IPR041709 -
Spst9g02009 479 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 78 306 IPR027417 -
Spst9g02009 479 SUPERFAMILY Translation proteins 285 381 IPR009000 -
Spst9g02009 479 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 121 136 IPR031157 -
Spst9g02009 479 Pfam Elongation factor Tu domain 2 305 373 IPR004161 GO:0005525
Spst9g02009 479 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 80 284 IPR000795 GO:0003924|GO:0005525
Spst9g02009 479 Pfam Elongation factor Tu GTP binding domain 80 281 IPR000795 GO:0003924|GO:0005525
Spst9g02009 479 CDD EFTU_II 291 377 IPR033720 -
Spst9g02009 479 PRINTS GTP-binding elongation factor signature 201 210 IPR000795 GO:0003924|GO:0005525
Spst9g02009 479 PRINTS GTP-binding elongation factor signature 164 175 IPR000795 GO:0003924|GO:0005525
Spst9g02009 479 PRINTS GTP-binding elongation factor signature 148 158 IPR000795 GO:0003924|GO:0005525
Spst9g02009 479 PRINTS GTP-binding elongation factor signature 84 97 IPR000795 GO:0003924|GO:0005525
Spst9g02009 479 PRINTS GTP-binding elongation factor signature 128 136 IPR000795 GO:0003924|GO:0005525
Spst9g02009 479 CDD EFTU_III 380 474 - -
Spst9g02009 479 Gene3D Translation factors 418 478 - -
Spst9g02009 479 FunFam Elongation factor Tu 418 478 - -
Spst9g02009 479 FunFam Elongation factor Tu 71 283 - -
Spst9g02009 479 Gene3D - 72 283 IPR027417 -
Spst9g02009 479 PANTHER ELONGATION FACTOR TU-RELATED 69 478 - -
Spst9g02009 479 Gene3D Translation factors 286 414 - -
Spst9g02009 479 Hamap Elongation factor Tu [tuf]. 71 479 IPR004541 GO:0003746|GO:0005525|GO:0006414
Spst9g02009 479 FunFam Elongation factor Tu 286 414 - -
Spst9g02009 479 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 378 478 IPR009001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g02009 Spst-Chr9 39010465 39011904 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g02009 78 477 Eukaryotic Initiation Factors Gene Family AT5G60390 30.222 1.40e-46 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g02009 K02358 - gmx:100793431 843.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g02009 9 39010465 39011904 Spst9g02009 9 39010465 39011904 ECH
Spst3g04506 3 96706986 96708437 Spst9g02009 9 39010465 39011904 PCT