Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01995 ATGGCATCATCCAGCTCCTACAACTCTCCTTGTGCTGCCTGCAAATTCTTGAGGAGGAAATGCCTTTCAGGGTGCATCTTTGCACCTTACTTCCCACCAGAAGAGCCTCAAAAGTTCGCCAACGTGCACAAGATCTTTGGTGCTAGCAATGTGACGAAGCTCCTGAATGATCTTCTCCCTCACCAGAGGGAAGATGCAGTGAACTCCCTTGCCTATGAAGCTGAGGCACGTGTGAGAGACCCCGTTTATGGCTGCGTAGGAGCCATCTCTTTCCTGCAAAGACAAGTTCAAAGGCTCCAAAAGGAGCTTGATTCTGCCAATGCTGATCTCCTTCGCTATGCCTGCAATGACATGCCTCCGCCCTCTCTTTCCGTGCCACCAGCAATGACAGCAACAACAATTCAACAAATGCCACAAAGGTCTTTCACTGCAAGGTTTGGAAATGAAGCAAGTGGGTTTTACAGGCCCTCCCCTACCAGCACTTACAACTCTTTCCCTTATTCTCTTCCATGGACTGATACCCCTCCCGAGGATATCAATGATGGAGGAGGAGAAGGAGGAGTTTTCATCATGTACCGGGGAAAAGGTAAGATGATGAATCTCTTGGTTCTAAAGAGACTTGGTCTCTATAGTCTCAATTCCCGTGAGAAATCCATCAATCTTGGTCTGTCTGCACCATGCCAAGACGTGGAAAAGAAGCAAAGAGCAGGTGAAAAATGGCAGGGTGAGGTTATTAGAAAGGACAAACATGTGGTGGAGGGTGTTGGGGGGTCCTATCCCTATTTAAGCCCCCACAACAAATTCTTTATGTCCTCGTGGACCTAA 825 0.4812 MASSSSYNSPCAACKFLRRKCLSGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNDLLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDSANADLLRYACNDMPPPSLSVPPAMTATTIQQMPQRSFTARFGNEASGFYRPSPTSTYNSFPYSLPWTDTPPEDINDGGGEGGVFIMYRGKGKMMNLLVLKRLGLYSLNSREKSINLGLSAPCQDVEKKQRAGEKWQGEVIRKDKHVVEGVGGSYPYLSPHNKFFMSSWT 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01995 274 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Spst9g01995 274 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
Spst9g01995 274 Coils Coil 89 116 - -
Spst9g01995 274 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01995 Spst-Chr9 37453251 37457487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01995 1 173 AS2 family AT5G63090 64.835 5.29e-72 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Spst9g01995 LOB 3e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01995 - - gmx:100799774 328.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g04525 3 96941889 96943696 Spst9g01995 9 37453251 37457487 ECH
Spst9g01995 9 37453251 37457487 Spst9g01995 9 37453251 37457487 ECH
Spst3g04525 3 96941889 96943696 Spst9g01995 9 37453251 37457487 PCT