Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01988 ATGACTCGCCCATGTTCCGGCAACAGGGAAGGGCTTGGAGAGGCATATGATGGAGACATTGCATTTGCTAGTGCCCTTGAAAGTTTTGGAGGAGGACATAGTGATCCTCTATTTGTAACTTTGGGAGGACCAGTTATGACCAAATTTGCTATTGCTTTGAGAGAAATCAGTACATGCAAGGAACTTCTTCGGTCACAGGCGGAGCACATGCTGAATGATCGATTACTAAACATTCTAAACGTCGATATCGTAGATGTCAAGGAAGCTCGAAGGCGTTTTGAGAAAGCTTCCCTTGTACATGATCAGGCACGTGAGAAGTTTATGTCACTGAGAAAAAGCACTAGGATGGATATTGCCACTGTCTTGGAAGAGGAATTGCACAATGCAAGAACCTCATTTGAGGAATCTCGTTTCAATCTGGTTAGTGCTCTTCACAATGTTGAGGCCAAGAAGAGATTTGAGTTTTTGGAGGCTGTCACTGGAGTTATGGATGCTCATCTTCGGTATTACCGACAGGGATATCAGCTATTGCATGAGCTTGAGCCTTTCATTATCGAGGTTTTGACTTATACACAAAAGGCAAGAGAAAGCTACAATGAGGAGCAGATTAGTCTTTGTGAAAGAATGCTGGAGTACAAAAAACATGTTCATCACGAAAGTATGTTGTCCTTGAATGGCCCTTATATTCCTCCTGGTGGTAGAGATGGGAATACAGTGCAGCCTTTTTCAAGGATATCAAATGAAGTGGCAGATGCTGTAACAGAATCTGCTGAAAATGGAAAGGTTCAGATCATTAGGCAAGGATATCTTTGTAAACGATCTTCAAATTTGAGGGGTGATTGGAAGAGAAGGTATTTTGTTCTTGATAGTCGTGGAATGCTTTACTACTTTCGTAAACCATGGAATGGATTAAATGGTAACAATCAATCCATGCACAGAAATTGTGCCACTGATAACAGTGCTGGAATTTTGAGTCGCCTGCTTTCTTCACATTACCATGGAGCTATGCCTGATGAAAAATCTGTAGCACGTCACACAGTGAACCTGCTAACATCAACAATCAAAGCTGATGCTGAACAGACAGATTTAAGGTTCTGCTTCAGGATTATTTCACCGTCGAAGAGTTACACATTGCAGGCAGAAAATGCCATGGATCAGACGGATTGGATGGAAAAGATAACTGGTGTAATTGCCTCCTTGCTGACTACACAGACACTGGATGAGCCAGAAAATGGTCACAGTGCCAGCAAGCTTTATTTATTACCGGGTTGTCCAGATGATGAAGCATGGAGTGGGGATTCTATGTCATCTGAAGACTCGCAGAAGAATAAGCAAAGTACAAAACATGAAAAGCCAATTGATATTCTTAGAAAAGTTAGTGGCAATGACAAATGTGCTGATTGTGGTAAACCTGATCCAGACTGGGCATCCTTAAATCTTGGCATCCTCATATGCATTGAATGTTCCGGTGTCCACCGGAATCTTGGTGTACATATATCAAAAGTAAGATCACTGACCCTTGATGTAAAAGTATGGGATTCAGCTGTCTTGAGCATGCTTCAGTCGCTAGGGAATCACTTTGCAAACTCAGTTTGGGAGGAACTGTTGCAGTCAAATACTTCACAAACAGATGACACTCATGATGGATCATACAAACCACCCAAAAAGTTATTTCATGCAAGAAAACCATCACATGATGATCCTATTTCACTGAAGGAGAGGTTCATTCATGCAAAGTATGATGCAAAAGTCTTTGTTAACCGGACAAGGAACAACAACCGTCACCTTTCAACGGCACGTGAGGTGGTAGAAAGCATCAACGCCAACGACAAGAAAGCAGTGTATCGACACATTGTGAAATCAGATTTGGATGTCAATGCTATCAGTAGTGAAGAAGGCTTTTCTTCCTACATAGCTTCTTCAACTAACGATCCAAACAAATCACGTGAAATCACAACCCAACCTGTGGGAGACAGACATGATGGTTTTACTGCGCTTCACCTGGCATGCCTAAGTTGTGATACTGCAATGGTGGAGCTACTCCTACAGTATGGGGCAGACTTGAATGCTATTGATTCTAGAGGGAGGACACCACTATATTACTGCACTAAGATAGGAAAGCATGCAACTACAAAAGTGCTTATTACAAGGGGGGCCAATCCACTTGCCGTTGACAAAGAAGGCAACACTCCTTTTAAGCTTGCAACAGAACCTGATACTGCTGGCAAAGATACTCCTGCTCCTAACCAGGAAACGACATGCCCTCAAAACTCACTAGAAACATAA 2286 0.423 MTRPCSGNREGLGEAYDGDIAFASALESFGGGHSDPLFVTLGGPVMTKFAIALREISTCKELLRSQAEHMLNDRLLNILNVDIVDVKEARRRFEKASLVHDQAREKFMSLRKSTRMDIATVLEEELHNARTSFEESRFNLVSALHNVEAKKRFEFLEAVTGVMDAHLRYYRQGYQLLHELEPFIIEVLTYTQKARESYNEEQISLCERMLEYKKHVHHESMLSLNGPYIPPGGRDGNTVQPFSRISNEVADAVTESAENGKVQIIRQGYLCKRSSNLRGDWKRRYFVLDSRGMLYYFRKPWNGLNGNNQSMHRNCATDNSAGILSRLLSSHYHGAMPDEKSVARHTVNLLTSTIKADAEQTDLRFCFRIISPSKSYTLQAENAMDQTDWMEKITGVIASLLTTQTLDEPENGHSASKLYLLPGCPDDEAWSGDSMSSEDSQKNKQSTKHEKPIDILRKVSGNDKCADCGKPDPDWASLNLGILICIECSGVHRNLGVHISKVRSLTLDVKVWDSAVLSMLQSLGNHFANSVWEELLQSNTSQTDDTHDGSYKPPKKLFHARKPSHDDPISLKERFIHAKYDAKVFVNRTRNNNRHLSTAREVVESINANDKKAVYRHIVKSDLDVNAISSEEGFSSYIASSTNDPNKSREITTQPVGDRHDGFTALHLACLSCDTAMVELLLQYGADLNAIDSRGRTPLYYCTKIGKHATTKVLITRGANPLAVDKEGNTPFKLATEPDTAGKDTPAPNQETTCPQNSLET 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01988 761 Gene3D - 255 413 IPR011993 -
Spst9g01988 761 MobiDBLite consensus disorder prediction 430 453 - -
Spst9g01988 761 Pfam PH domain 265 397 IPR001849 -
Spst9g01988 761 SUPERFAMILY ArfGap/RecO-like zinc finger 449 588 IPR037278 -
Spst9g01988 761 ProSiteProfiles Ankyrin repeat region circular profile. 694 720 - -
Spst9g01988 761 MobiDBLite consensus disorder prediction 548 565 - -
Spst9g01988 761 ProSiteProfiles PH domain profile. 263 398 IPR001849 -
Spst9g01988 761 PANTHER CENTAURIN/ARF 9 741 IPR045258 GO:0005096
Spst9g01988 761 CDD ArfGap 453 580 - -
Spst9g01988 761 SUPERFAMILY PH domain-like 172 397 - -
Spst9g01988 761 CDD BAR_SFC_plant 1 183 IPR035670 -
Spst9g01988 761 SUPERFAMILY Ankyrin repeat 616 737 IPR036770 -
Spst9g01988 761 Gene3D Arfaptin homology (AH) domain/BAR domain 2 218 IPR027267 -
Spst9g01988 761 SMART PH_update 264 400 IPR001849 -
Spst9g01988 761 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 433 594 - -
Spst9g01988 761 Pfam Putative GTPase activating protein for Arf 453 587 IPR001164 GO:0005096
Spst9g01988 761 Gene3D Arf GTPase activating protein 431 594 IPR038508 -
Spst9g01988 761 Pfam BAR domain of APPL family 44 201 IPR004148 GO:0005515|GO:0005737
Spst9g01988 761 MobiDBLite consensus disorder prediction 743 761 - -
Spst9g01988 761 MobiDBLite consensus disorder prediction 725 761 - -
Spst9g01988 761 ProSiteProfiles Ankyrin repeat profile. 661 693 IPR002110 GO:0005515
Spst9g01988 761 SMART ANK_2a 661 690 IPR002110 GO:0005515
Spst9g01988 761 SMART ANK_2a 694 723 IPR002110 GO:0005515
Spst9g01988 761 ProSiteProfiles Ankyrin repeat region circular profile. 661 692 - -
Spst9g01988 761 Pfam Ankyrin repeats (many copies) 664 715 IPR002110 GO:0005515
Spst9g01988 761 SMART 5bar 1 186 IPR004148 GO:0005515|GO:0005737
Spst9g01988 761 ProSiteProfiles ARF GTPase-activating proteins domain profile. 450 593 IPR001164 GO:0005096
Spst9g01988 761 MobiDBLite consensus disorder prediction 539 565 - -
Spst9g01988 761 CDD PH_ACAP 266 402 - -
Spst9g01988 761 SMART arf_gap_3 450 593 IPR001164 GO:0005096
Spst9g01988 761 ProSiteProfiles Ankyrin repeat profile. 694 726 IPR002110 GO:0005515
Spst9g01988 761 Coils Coil 86 106 - -
Spst9g01988 761 Gene3D - 596 743 IPR036770 -
Spst9g01988 761 SUPERFAMILY BAR/IMD domain-like 5 286 IPR027267 -
Spst9g01988 761 PRINTS HIV Rev interacting protein signature 481 498 IPR001164 GO:0005096
Spst9g01988 761 PRINTS HIV Rev interacting protein signature 504 525 IPR001164 GO:0005096
Spst9g01988 761 PRINTS HIV Rev interacting protein signature 462 481 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01988 Spst-Chr9 34391294 34399141 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01988 454 586 C2H2 Transcription Factor Family AT4G21160 44.030 1.15e-22 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01988 K12489 - gmx:100797073 1180.62