Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01981 ATGGAAAGGCTAAATTTTGTTAAAAATGGAGTGAGTAGATTGCCTCCTGGTTTTCGTTTCCAGCCAACAGATGAAGAGCTTGTCTTCCAGTACTTGAAATGTAAGATCTTTTCCTCCCAGTTGCCTGCTTCAATCATTCCTGAGATCAATAATGTCAGCAAGTATGATCCCTGGGATTTGCCAGGAAATTGTGATGATGAAGAGAGGTACTTTTTCAGCTCCAAGGAAGTCAAGTATCGAAGAGGAAATCGTATGAACCGAACATCCAACTCTGGCTATTGGAAGGCAACAGGATCAGACAAAAAAATTTCATCATCAATAAATAATGGCATTGTGGGATTAAGAAAGACTCTTGTATTCTATGAAGGAAAATCTCCAAATGGGTCTCGAACTGAATGGGTCATGCATGAATATCGACTCGTCAGTGTGGAAACTAGTGCTTCCAATTCATCACAGAAGGATGCAAACGAGATAGGGGATTGGGTTCTGTGTCGCATATCCTTGAAGAAAAGAAGTATAGAAAGTGATAACAACACTACTCCATCAGGAAGAACAATGGTGAATAATGCTGAGATGGCTCAGCCAAGATTCTTTGATTTTTTAAGTGTTCATCACAATTCACTTCCGGCTCCTGCACATTCTTCTACGTCCTCAACTTGTTCAAGTTCCAATAACGTTGTAGATGTCTCTTTTCCTAACCATGAAGAAACAAGTGGCTACGGCCATTTTTAA 732 0.4003 MERLNFVKNGVSRLPPGFRFQPTDEELVFQYLKCKIFSSQLPASIIPEINNVSKYDPWDLPGNCDDEERYFFSSKEVKYRRGNRMNRTSNSGYWKATGSDKKISSSINNGIVGLRKTLVFYEGKSPNGSRTEWVMHEYRLVSVETSASNSSQKDANEIGDWVLCRISLKKRSIESDNNTTPSGRTMVNNAEMAQPRFFDFLSVHHNSLPAPAHSSTSSTCSSSNNVVDVSFPNHEETSGYGHF 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01981 243 ProSiteProfiles NAC domain profile. 14 169 IPR003441 GO:0003677|GO:0006355
Spst9g01981 243 Pfam No apical meristem (NAM) protein 15 140 IPR003441 GO:0003677|GO:0006355
Spst9g01981 243 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 214 - -
Spst9g01981 243 Gene3D NAC domain 23 174 IPR036093 GO:0003677|GO:0006355
Spst9g01981 243 SUPERFAMILY NAC domain 10 169 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01981 Spst-Chr9 33394609 33395944 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01981 1 172 NAC Transcription Factor Family AT5G13180 62.791 1.40e-70 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst9g01981 NAM 2.3e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01981 - - aprc:113868555 382.874