Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01977 ATGAAAGATTCGGCGGAAACAGATCCTATAGCTGATTCTCTCAACCTACTGAGTACACTCCTGGACTCGGAACTACCCAGCGTCACAAACTTCAAAGGGAAATGGTCACTCGCCCGAGTCAAACTCACCAACCTTCACACTCACCTCACAGATTTCTCCGGCGAGTTTCCCAACGCCTCCACCACCAACCCCCTCTCCCTCCACCTCCTCCACTCCATATCCCACACGCTCCACGACGCCGTTTTACTCGCCGGCACGTGCCAGCTCCAAGACCTTCCCAACGGCAAGCTCAAAACCCAAAGCGACCTCGACTCCCTCCTCGCTACCCTCGACCGCCACGTCACCGACTGCGACATCCTCTTCCGCAGCGGTCTCCTCCTCGAAAACGCCGCCGTTTCCACCTCCTCTAAAAGAGAAGCCATCCGCTCTGCATCGCGAAACCTAATCACCCGGTTGCAAATCGGGTCGCCCGAGTCCAAAACCTCCGCGATGGACTCACTATTGGGCCTTCTCCACGAAGACGACAAAAATGTTACCATTGCTGTGGCCCAGGGGGTCGTTCCCGTGCTCGTGCGCCTACTAGATTCCCCCTCCGACATGAAGGAGAAAACCGTCGCCGCTATCGCCAAAGTCTCCACCGTCGAAAGCGCCAAGACCGTGCTCCTTGCCGAGGGTTTGCTCCTTCTCAACCACCTTCTCCGGGTGCTGGATTCTGGAAGCGGATTCGCGATTGAGAAAGCATGCATCGCGCTTCGCGCACTGAGTCTCACCAAGGACAACGCCAGAGCGATTGGCTCGCGCGGCGGAATCTCGTCGCTGCTGGAGATTTGCCAGGCTGGCACCCCTGGCGCGCAGGCCTCCGCCGCCGTCGTGTTGCGCAACCTAGCCGCATTTTCTGAGATTAGGGACAATTTCGCGGAGGAGAATGCGGTGGTGGTTTTAATTGCCTTGGCTTCCTCCGGGACTGCTTCGGCGCGTGAGAACGCGATTGGTTGTTTGTCGAATTTGATTTCCGAGGCTGACTCCGAGGGTATGTTGAATTTGAGGATTATGGTGGTTAAAGAAGGTGGGATTGAGTGCTTGAAGAATTACTGGGACTCGGGCACTCCAATTCCGAGTCTTGAAGTTGCAGTGACGATGTTGCGGCATTTGGCTGTGAGTGCTGCAATTGGGGAGGTTCTGATTGGTGAAGGGTTTGTTCAGAGGCTTGTGGGGGTGCTGAACTGTGAGGTGCTGGCGGTGAGGATTGCGGCGGCTAGGGCAGCTCACGCTTTAGGGTTGAACTGTGGGAGGGCGAGGAAGGAGATGGGGGAATTGGGGTGCGTGTTGGGTTTGATTAAGATGTTGGATGGGAAGGGTGTAGAGGAGAAAGAAGCTTCTGCAATGGCATTGTCGGTGCTGCTGATGCACCCTGTGAATAGGAGGGTTTTCCGCAAGGATGAAAGAGGGGTTGTGAGTGCGGTTCATTTGTTGAACCCTTCGTTGCAGGGATTAGATAAGAAGTACCCTGTTTCGTTGCTCGCTTCGTTAGTGCATACAAAGAGTTGCAGAAAGCAAATGGTAGCAGCAGGGGCTTGTGTATATACGCAGAAGCTTGTGGAGATGGATGTGCCGGGATCAAAGAAACTCTTGGAGAGTCTCGGGCGTGGCAAGATTTGGGGTGTTTTTGCTAGACCCTAG 1680 0.55 MKDSAETDPIADSLNLLSTLLDSELPSVTNFKGKWSLARVKLTNLHTHLTDFSGEFPNASTTNPLSLHLLHSISHTLHDAVLLAGTCQLQDLPNGKLKTQSDLDSLLATLDRHVTDCDILFRSGLLLENAAVSTSSKREAIRSASRNLITRLQIGSPESKTSAMDSLLGLLHEDDKNVTIAVAQGVVPVLVRLLDSPSDMKEKTVAAIAKVSTVESAKTVLLAEGLLLLNHLLRVLDSGSGFAIEKACIALRALSLTKDNARAIGSRGGISSLLEICQAGTPGAQASAAVVLRNLAAFSEIRDNFAEENAVVVLIALASSGTASARENAIGCLSNLISEADSEGMLNLRIMVVKEGGIECLKNYWDSGTPIPSLEVAVTMLRHLAVSAAIGEVLIGEGFVQRLVGVLNCEVLAVRIAAARAAHALGLNCGRARKEMGELGCVLGLIKMLDGKGVEEKEASAMALSVLLMHPVNRRVFRKDERGVVSAVHLLNPSLQGLDKKYPVSLLASLVHTKSCRKQMVAAGACVYTQKLVEMDVPGSKKLLESLGRGKIWGVFARP 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01977 559 Gene3D - 373 545 IPR011989 -
Spst9g01977 559 Gene3D - 134 370 IPR011989 -
Spst9g01977 559 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 185 226 IPR000225 GO:0005515
Spst9g01977 559 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 15 557 - -
Spst9g01977 559 SMART arm_5 257 297 IPR000225 GO:0005515
Spst9g01977 559 SMART arm_5 298 338 IPR000225 GO:0005515
Spst9g01977 559 SMART arm_5 174 213 IPR000225 GO:0005515
Spst9g01977 559 SUPERFAMILY ARM repeat 147 491 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01977 Spst-Chr9 33328414 33330093 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01977 143 322 U-box Gene Family AT1G23030 28.177 3.56e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01977 - - vum:124844092 949.118