Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01962 ATGGATATCAATATAAAGGGAGAAATAGAGAGGGTAAATTGGAAGGAACTGAGTTACAGTGAGTTTGTGGAAAGATATATGGAGAAGAACAAGCCCGTGGTGTTCACTGGGCTAATGGATTCTCATCATTGGAGAGCTTCCACTGATTGGGTCACACTTCATTCCCAACCCAACTTTCAATTTTTCTCCACCCATTTTGGAGCTTCTAAAGTTCAGGTTGCTGATTGTGACACCAGAGAATTCACTGATCAGAAAAGAGAGGAGATGCTGGTCGCAGATTTTATAGCACGTTGCCTTCATCTTGAGGAGGCTTCTGCTGTTCAGTGTAATAATGAAAATTTTGCATGTAATGGTGCATCTGTATCTGTACCGTATTTGAAGGATTGGCATTTTGTAAAGGAGTATCCTGAATACGTAGCATATGACACTCCAAGGTTCTTTCGTGATGATTGGCTCAATCTGTATCTTGACAACTTCAGAATCCATATTGATTCTGACACAGAACAACCAAATGAGGAAATATGTTGCTCTGACTATCGATTTGTTTACATGGGCGTGAAAGGATCTTGGACTCCTCTTCATGCTGATGTTTTCAGGTCGTATAGTTGGTCAGCAAATGTCTGTGGAAAGAAGAGATGGCTTTTTCTAGATCCTTCCCAATGTCATTTTGTATTTGACAGGAATATGAAAAATTGTGTATATAATATCTTTGATGAAGTGTCAAACTCAAAGTTTCCTGGTTTTATCAAGGCTATCTGGTTAGAATGCACACAAGATGCAGGTGAAATTATATTTGTTCCCAGCGGATGGTATCATCAAGTTCATAATTTGGAGGATACGATTTCTATTAACCACAATTGGTTCAATGCCTATAACCTTTCTTGGGTGTGGAATTTACTTTTAAGGGACTACAATGAGGCCAAGGAATACATAGAAGACATCAAGGATTTATGTGAGGATTTTGAAGGTCTCTGCCAGCGCAATCTTGCTGCTAACACAGGGATGAATTTTTATGACTTCTTTACTTTCATGTCATACTTCACCTTGGCCAACTTGGTGTTGCTTCGTTATATAAATAGAAGATATGGAAGTACGACTGGAAGTTCATCAACAATAGCTCAGCATTTATCCATGAATCTTGGGTGTTTAAAGAAGATTGCTTCAGAGATGAAACACATGCGTGCTCTAGAAGGAAATCATGATTGCGTTGTGGATATTATCAAAGCATTTGAAGATCCTAGGTTTTCCAAATTATGCATGCATATTGGAAGAACATATGCCATGGTACATGAGCAATCTCACTTGTCCTCTGATTTCGAGAGCACTTCAATGAGTGATTTGGTGGACCTGAATGATATGAAATCATACACATCTCAGATCTACACACCTGATGGTCTCATTAAATTTATAGACGATAGTGTTGCAGAAGAGGATCCATTTGTACTCCATATTGCTTGA 1458 0.3868 MDINIKGEIERVNWKELSYSEFVERYMEKNKPVVFTGLMDSHHWRASTDWVTLHSQPNFQFFSTHFGASKVQVADCDTREFTDQKREEMLVADFIARCLHLEEASAVQCNNENFACNGASVSVPYLKDWHFVKEYPEYVAYDTPRFFRDDWLNLYLDNFRIHIDSDTEQPNEEICCSDYRFVYMGVKGSWTPLHADVFRSYSWSANVCGKKRWLFLDPSQCHFVFDRNMKNCVYNIFDEVSNSKFPGFIKAIWLECTQDAGEIIFVPSGWYHQVHNLEDTISINHNWFNAYNLSWVWNLLLRDYNEAKEYIEDIKDLCEDFEGLCQRNLAANTGMNFYDFFTFMSYFTLANLVLLRYINRRYGSTTGSSSTIAQHLSMNLGCLKKIASEMKHMRALEGNHDCVVDIIKAFEDPRFSKLCMHIGRTYAMVHEQSHLSSDFESTSMSDLVDLNDMKSYTSQIYTPDGLIKFIDDSVAEEDPFVLHIA 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01962 485 Pfam Cupin-like domain 21 287 IPR041667 -
Spst9g01962 485 SUPERFAMILY Clavaminate synthase-like 6 318 - -
Spst9g01962 485 SMART cupin_9 124 304 IPR003347 -
Spst9g01962 485 Gene3D Cupin 2 288 - -
Spst9g01962 485 ProSiteProfiles JmjC domain profile. 132 304 IPR003347 -
Spst9g01962 485 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 10 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01962 Spst-Chr9 29722101 29725683 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01962 7 296 Glycosyltransferase AT1G78280 24.667 1.84e-16 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Spst9g01962 Cupin_8 3.6e-22 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01962 - - gmx:100803814 890.182