Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01950 ATGGCCCGAAGAAATTCGACTCCAGGGTTTCGGTTCCGTCCCACTGATGTTGAGTTGATTGAGTTTTTTCTGAAGAGGAAGGTTCGGGGTAAGAACATTCCTAGCGGAGTGATCGCCGAGCTTGACTTGTACAAGTATGCTCCGTGGGATCTTCCAGATAAATCTGTGCTCCAGAGTGGGGATTTGGAATGGTACTTCTTTTGCCCGCGGGGGAAGAAGTATTTGACTGGAGGGAGGTTGAATCGTGCTACGGAGGCTGGGTACTGGAAGACTACTGGAAAGGATAGAGAGATTGAACACAAGAATCGAGTTGTGGGGATGATTAAAACTCTGGTTTTTCACACCGGTAAAGCCCCTAAGGGAGATCGGACTGATTGGGTTATGCATGAATTTAGACTTGATGACAAGGACATGGTTGATGAAGGAATTTCGCAGGACTCCTATGTAATTTGTAGAGTATTTCAAAAGGAAGGTCCTGGTCCTAGGAATGGTGCACAATATGGTAAACCATATGATGAGAAAGACTGGGATACAGATGAGGAAATTGACTCTGAACAATCTGCCGGTGTTGTTTCTGTGTCTGCACCTGTTCCTATACAACCTAGTGAAAGTCATATTTCTGTTGCAAATGACATCCATACCTCTACAAGTGGATGTGTTGGATTGTCCTCTCTATCATCTGCATCAAAATTGATACCTTCTTGCTCAGCACATCCTGCAGCTCCCAACAATCAAGCTGACTCTGTATCACATGTATCAGAATTGATGCCCTCTTGCTCAACACTTCCTTTTGCTCCAAACTATGAAGTTGACTCTGTATCACGTGTATTAAAATTGATACCCTCTTGTTCAATTCCTTTTCCTCCAAACTCTGAAGTTGACTCTGCATCATGTGTAGCAAAATTGATACCCTCTTGCTTGGCACTTACTTCGGCTCCAAACACTGTATCAGAACTGATTCCCTCTTGCCTAGAACATCCTTCGACTTCAGCTCCAAACCATCAAGTTGATGATAACATTTTATCTTTGCTAGATTATTTCAAAGAAGATGATGACACATTGGCTATGAATGAAAACAATGGAATTGAGAAGGTTGATACTGATCATGCGAACAATGGTGAAGGTGCACCATGTTTGGATCCAGATGTGATTTTTGAGAACTTAGGAGACCTTGGCAGCTTGGTTGGATTGGGAGATGGCAGTTTTTCCTGTGGCCAGAAAAATAGACTTTCCACTAGCGATATGCTTTATACAGGTGGTGATGATATGCTCGGGTCTTGGGAACCTCAAGACTTCTTGGAGTTGATGGACCTAGAGGGGCCCCAATCCTGGCAGAATAAACTTGGCAGTTCTAGCGAAGACAAGTAA 1368 0.4357 MARRNSTPGFRFRPTDVELIEFFLKRKVRGKNIPSGVIAELDLYKYAPWDLPDKSVLQSGDLEWYFFCPRGKKYLTGGRLNRATEAGYWKTTGKDREIEHKNRVVGMIKTLVFHTGKAPKGDRTDWVMHEFRLDDKDMVDEGISQDSYVICRVFQKEGPGPRNGAQYGKPYDEKDWDTDEEIDSEQSAGVVSVSAPVPIQPSESHISVANDIHTSTSGCVGLSSLSSASKLIPSCSAHPAAPNNQADSVSHVSELMPSCSTLPFAPNYEVDSVSRVLKLIPSCSIPFPPNSEVDSASCVAKLIPSCLALTSAPNTVSELIPSCLEHPSTSAPNHQVDDNILSLLDYFKEDDDTLAMNENNGIEKVDTDHANNGEGAPCLDPDVIFENLGDLGSLVGLGDGSFSCGQKNRLSTSDMLYTGGDDMLGSWEPQDFLELMDLEGPQSWQNKLGSSSEDK 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01950 455 MobiDBLite consensus disorder prediction 161 190 - -
Spst9g01950 455 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 231 - -
Spst9g01950 455 Pfam No apical meristem (NAM) protein 8 133 IPR003441 GO:0003677|GO:0006355
Spst9g01950 455 Gene3D NAC domain 15 158 IPR036093 GO:0003677|GO:0006355
Spst9g01950 455 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Spst9g01950 455 FunFam Nac domain-containing protein 86 15 159 - -
Spst9g01950 455 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01950 Spst-Chr9 28691487 28694932 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01950 1 236 NAC Transcription Factor Family AT5G09330 51.681 2.24e-81 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst9g01950 NAM 5.3e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01950 - - vun:114164401 658.292