Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01901 CTCTATGATCACTTCAACGTGGTTGCCCAAGTCGTTTCCATTAGAATTTGCAGGGACTCTTCAACTCAGAAATCCCTCGGTTACGGCTACGTCTATTTCAGTAACGTTCAGAATGCCGCAAAAGCATTGTATGAGCTAAATTTCAGTGTGTTGAAAGGCAAACCCATTAGGGTAATGTACTCTAATCGGGACCCTACTCTTCGTAGGACTGGTGCAGCTAACCTTTTTATAAAGGTGCCTTTTGCAGATTCTTCCCCCTTGATGAGTATTATTGAATCTTTTTCTGCTTGCTCATTGAATCTTAATTTGGATAAGTCAATCGATCACAGGGATCTATTCGATGTTTTTGCGACTTTTGGAAATATTCTATCTTGCAAGGTTGCGAGGGATGCTTCTGGCGTGTCTAAAGATCATGCTTTTGTGCAGTATGATAACGAAGACTCTGCAAAAGAGGCTACTGACAGGTTAAATGGCATGCTGCTCAATGATAAGAAGGTCTATGTGGGTCCTTTCATGCGAATGACAGGTTAA 531 0.4162 LYDHFNVVAQVVSIRICRDSSTQKSLGYGYVYFSNVQNAAKALYELNFSVLKGKPIRVMYSNRDPTLRRTGAANLFIKVPFADSSPLMSIIESFSACSLNLNLDKSIDHRDLFDVFATFGNILSCKVARDASGVSKDHAFVQYDNEDSAKEATDRLNGMLLNDKKVYVGPFMRMTG 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01901 176 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 102 173 IPR000504 GO:0003723
Spst9g01901 176 SUPERFAMILY RNA-binding domain, RBD 102 170 IPR035979 GO:0003676
Spst9g01901 176 SUPERFAMILY RNA-binding domain, RBD 1 71 IPR035979 GO:0003676
Spst9g01901 176 Gene3D - 101 169 IPR012677 -
Spst9g01901 176 ProSiteProfiles Forkhead-associated (FHA) domain profile. 117 166 IPR000253 GO:0005515
Spst9g01901 176 PANTHER RNA BINDING PROTEIN 1 173 - -
Spst9g01901 176 SMART rrm1_1 102 169 IPR000504 GO:0003723
Spst9g01901 176 SMART rrm1_1 1 59 IPR000504 GO:0003723
Spst9g01901 176 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 63 IPR000504 GO:0003723
Spst9g01901 176 Gene3D - 1 74 IPR012677 -
Spst9g01901 176 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 166 IPR000504 GO:0003723
Spst9g01901 176 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1 57 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01901 Spst-Chr9 26320448 26321214 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01901 1 173 Eukaryotic Initiation Factors Gene Family AT4G34110 55.491 4.21e-63 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01901 K13126 - sly:101258105 206.068