Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01888 ATGTCTGGGAAGGCAAAGAGGAGAGATGAAGATGGTGCCTCCGACGCCGACTCTGAAGGCCACGCTCCGCCCAAAAAGACTTTTAAGAAAGACTCCGACGATGAATCCGACACTATTATCGTATGCGAGATTTCGAAGAACAGGAGGGTTTCTGTAAGGAACTGGAATGGCAGGATTATGGTTGACATTCGCGAGTTTTACCTCAAGGATGGCAAAAAATTGCCTGGCAAGAAAGGTATCTCTTTGACCATGGATCAGTGGAATGTCCTCCGAACTCATGTTGAAGAAATTGACAAAGCAGTTAGTGAGAATTCTTAG 318 0.456 MSGKAKRRDEDGASDADSEGHAPPKKTFKKDSDDESDTIIVCEISKNRRVSVRNWNGRIMVDIREFYLKDGKKLPGKKGISLTMDQWNVLRTHVEEIDKAVSENS 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01888 105 Gene3D Transcriptional Coactivator Pc4; Chain A 29 105 IPR009044 GO:0003677|GO:0006355
Spst9g01888 105 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 18 104 IPR045125 GO:0003713|GO:0060261
Spst9g01888 105 FunFam Putative transcriptional co-activator 32 105 - -
Spst9g01888 105 Pfam Transcriptional Coactivator p15 (PC4) 42 92 IPR003173 GO:0003677|GO:0006355
Spst9g01888 105 MobiDBLite consensus disorder prediction 1 35 - -
Spst9g01888 105 SUPERFAMILY ssDNA-binding transcriptional regulator domain 41 102 IPR009044 GO:0003677|GO:0006355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Spst9g01888 PC4 5.5e-26 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01888 K25815 - gmx:100499936 182.57