Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01875 ATGAGCAACAAAGCCTCCCGAAAGCGTACGGCGGCGCCGCCGCAACCTCCGCCAGCGAAGCAACCCTTGATGTCTCAGGAAGAGGAGTTCATGGACGAAGATGTGTTCATCGACCAATCCCTCGTTTTAGAAGACGAAGAGTCCATCATTCTCCGCGACATCGAGCAGCGCCAGGCTCTGGCGGCGCGCCTATCAAAGTGGATGCGTCCTCCTCTCTCCGCCGACTACGTTGCACAATCTCGTAGCGTCATTTTTCAGCAGCTGGAGATTGATTATGTGATCGGGGAGAGTCATAGAGAGTTGCTGCCGAACTTGTCTGGAGCTGCTGCCATTATCAGAATCTTTGGAGTTACGAAGGAAGGACACAGTGTTTGCTGCAATGTTCATGGGTTTGAACCATATTTCTATGTCTGTTGCCCTCCTGGAATGGGTCCAGATGATATTTCTCATTTTCATCAAACTCTTGAGGGAAGGATGAGAGAAGCCAATAGAAACAATAATGTGGGAAAATTTGTTCGTCGTATTGAAATGGTTCAGAAGAGAAGCATTATGCACTATCAGCAATCTGATTCCCAACCCTTTCTCAAAATCGTAGTTGCACTCCCAACAATGGTTGCCAGCTGCCGTGGTATTCTTGATAGGGGTATTCAGCTTGATGGTCTGGGAATGAAGAGTTTCTTGACTTATGAAAGCAACGTACTTTTTGCTCTACGCTTCATGATTGATTGCAACATAGTTGGTGGAAATTGGATTGAAATTCCTGCTGGAAAATATAAGAAGACGATGAAAAACTTGTCTTACTGCCAGTTGGAGTTTGATTGCTTGTATTCTGAATTGATTAGTCATGCTCCAGAAGGAGAATATTCAAAGATGGCTCCATTTCGCATATTGAGTTTTGACATTGAGTGTGCTGGTCGTAAAGGTCATTTTCCTGACCCTAGCCATGATCCTGTTATCCAGATTGCTAATTTGGTTACTTTGCAAGGAGAAGACCAGCCAATTATTCGTAATGTGATGACCCTTGAATCATGTTCTCCTATTGTTGGTGTTGATGTGATGTCATTTGATACGGAAAGAGAAGTCCTGCTAGCTTGGAGGGAATTTATTCGTGAAGTGGACCCTGATATTATTATTGGATATAACATTTGCAAATTTGACTTGCCATATCTAATTGAGAGAGCTGCAAACCTGAAGATAGCAGAATTTCCAATTCTTGGCCGGATCAGGAACAGCAGAGTTCGGGTAAAGGATACAACTTTCTCGTCAAGGCAGTACGGGACCAGGGAAAGTAAAGAAGTTACAGTAGAAGGGAGAGTTCAGTTTGACTTACTCCAGGTTATGCAAAGAGACTACAAATTAAGTTCTTATTCACTCAATTCTGTGTCAGCACACTTCCTTTCTGAGCAGAAAGAGGATGTCCATCATTCAATTATATCCGATCTTCAGAATGGAACCGCAGAAACTAGGAGGCGCCTTGCTGTGTATTGTTTGAAGGATGCATATCTCCCTCAGCGGCTCTTGGATAAATTGATGTTCATTTACAATTATGTGGAAATGGCTCGAGTAACAGGTGTCCCAATTTCTTTTCTACTTTCCAGAGGCCAAAGCATAAAGGCAAATGTACTTTCTCAACTTCTTAGGAAGGCAAGACAGAAGAATATGGTCATTCCTAATGTCAAACAGGCTGGGTCTGAACAAGGAACATTTGAAGGTGCCACTGTATTGGAGGCAAGGGCTGGATTTTATGAAAAACCAATTGCTACATTAGATTTTGCATCCCTGTATCCATCTATTATGATGGCCTATAATTTATGTTATTGCACTCTGGTGACCCCTGAAGATGTTCAGAAGCTCAACATCCCTCCAGAGTCTGTGAACAGAACTCCATCTGGTGAAACGTTTGTTAAATCAAATTTGCAGAAGGGAATACTTCCTGAAATACTTGAGGAGCTATTAACAGCCCGCAAAAGGGCAAAAGCAGACTTAAAGGAGGCAAAGGATCCCCTGGAGAGGGCAGTGCTGGATGGTAGACAGCTGGCTCTGAAAATTAGTGCAAATTCTGTGTATGGGTTTACGGGAGCTACCATTGGTCAGTTACCATGTTTAGAGATATCATCGAGTGTAACAAGCTATGGTCGACAAATGATTGAGCACACGAAAAAACTTGTGGAAGATAAATTTACAACACTTAATGGCTATGAACACAATGCTGAGGTAATATATGGAGACACAGATTCAGTCATGGTACAATTTGGTGTTTCTGCTGTAGATCAGGCTATGAACTTGGGGAGAGAAGCTGCTGAATATATTAGTGGAACTTTCACAAAACCCATCAAACTAGAATTTGAGAAGGTTTACTATCCATATCTCTTGATTAGCAAGAAGAGATATGCTGGTTTGTTTTGGACAAAACCAGACAACTTTGACAAAATGGATACTAAAGGGATTGAAACAGTTCGAAGAGACAATTGTTTGTTGGTCAAAAACCTGGTGAATGATTGTCTTCACAAAATACTGATCGACAGGGACATTCCAGGGGCTGTCCAGTATGTGAAGAATGCAATTTCAGATCTTCTCATGAATCGAATGGATTTATCACTTCTGGTTATTACAAAGGGTTTAACGAAGACAGGAGATGATTATGAAGTAAAGGCAGCTCATGTTGAACTTGCTGAAAGGATGCGCAAGCGAGATGCTGCCACTGCTCCAAATGTTGGAGACAGAGTACCTTATGTAATTATCAAAGCAGCAAAAGGTGCGAAGGCATATGAAAAATCAGAAGATCCTATCTATGTGCTAGAGAACAACATACCAATAGATCCTCAATACTATCTTGAGAATCAAATTAGCAAGCCGATTCTGAGAATTTTTGAGCCTATTCTGAAGAATGCTAGCAGAGAGCTTCTACATGGAAGTCATACAAGATCTATTTCTATTTCTACTCCATCAAATAGTGGAATATTGAAATTTGCTAAGAAACAGCTTACCTGCATTGGCTGTAAAGCTGTACTTGGCAAGGGTTATCACACCGTCTGTTCACATTGCAAAGGAAGGGAAGCTGAGCTATACTGCAAAACAGTATCTCAAGTGTCTGAGCTGGAGGTGCTTTTTGGGAGGTTGTGGACACAGTGTCAGGAGTGCCAAGGTTCACTTCATCAAGATGTTCTCTGCACAAGTCGGGATTGTCCAATTTTTTATCGACGAAAAAAGGCACAGAAAGATATGGCCGAAGCAAAATCGCAATTGGACCGATTTTGCGACATCTGGTTCATAGCAGAATTTTACCTTGAGGATCACAGAAACCGTGGACGGAATGTGCTGTTCGGCAATCCTGATCGCACTTTCTGA 3348 0.4217 MSNKASRKRTAAPPQPPPAKQPLMSQEEEFMDEDVFIDQSLVLEDEESIILRDIEQRQALAARLSKWMRPPLSADYVAQSRSVIFQQLEIDYVIGESHRELLPNLSGAAAIIRIFGVTKEGHSVCCNVHGFEPYFYVCCPPGMGPDDISHFHQTLEGRMREANRNNNVGKFVRRIEMVQKRSIMHYQQSDSQPFLKIVVALPTMVASCRGILDRGIQLDGLGMKSFLTYESNVLFALRFMIDCNIVGGNWIEIPAGKYKKTMKNLSYCQLEFDCLYSELISHAPEGEYSKMAPFRILSFDIECAGRKGHFPDPSHDPVIQIANLVTLQGEDQPIIRNVMTLESCSPIVGVDVMSFDTEREVLLAWREFIREVDPDIIIGYNICKFDLPYLIERAANLKIAEFPILGRIRNSRVRVKDTTFSSRQYGTRESKEVTVEGRVQFDLLQVMQRDYKLSSYSLNSVSAHFLSEQKEDVHHSIISDLQNGTAETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMARVTGVPISFLLSRGQSIKANVLSQLLRKARQKNMVIPNVKQAGSEQGTFEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVTPEDVQKLNIPPESVNRTPSGETFVKSNLQKGILPEILEELLTARKRAKADLKEAKDPLERAVLDGRQLALKISANSVYGFTGATIGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTTLNGYEHNAEVIYGDTDSVMVQFGVSAVDQAMNLGREAAEYISGTFTKPIKLEFEKVYYPYLLISKKRYAGLFWTKPDNFDKMDTKGIETVRRDNCLLVKNLVNDCLHKILIDRDIPGAVQYVKNAISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYEKSEDPIYVLENNIPIDPQYYLENQISKPILRIFEPILKNASRELLHGSHTRSISISTPSNSGILKFAKKQLTCIGCKAVLGKGYHTVCSHCKGREAELYCKTVSQVSELEVLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEAKSQLDRFCDIWFIAEFYLEDHRNRGRNVLFGNPDRTF 1115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01875 1115 FunFam DNA polymerase 332 567 - -
Spst9g01875 1115 Gene3D - 293 511 IPR036397 GO:0003676
Spst9g01875 1115 FunFam DNA polymerase 89 264 - -
Spst9g01875 1115 PANTHER DNA POLYMERASE CATALYTIC SUBUNIT 69 1053 - -
Spst9g01875 1115 FunFam DNA polymerase 642 694 - -
Spst9g01875 1115 SUPERFAMILY Ribonuclease H-like 108 531 IPR012337 -
Spst9g01875 1115 NCBIfam DNA polymerase (pol2) 346 958 - -
Spst9g01875 1115 SUPERFAMILY DNA/RNA polymerases 552 962 IPR043502 -
Spst9g01875 1115 Gene3D Helix hairpin bin 642 694 - -
Spst9g01875 1115 CDD DNA_polB_delta_exo 288 517 - -
Spst9g01875 1115 Pfam DNA polymerase family B, exonuclease domain 118 461 IPR006133 -
Spst9g01875 1115 Pfam C4-type zinc-finger of DNA polymerase delta 997 1068 IPR025687 -
Spst9g01875 1115 Pfam DNA polymerase family B 525 960 IPR006134 GO:0000166|GO:0003677
Spst9g01875 1115 Gene3D Palm domain of DNA polymerase 569 798 IPR023211 -
Spst9g01875 1115 Gene3D - 815 970 IPR042087 -
Spst9g01875 1115 PRINTS DNA-directed DNA-polymerase family B signature 586 599 IPR006172 GO:0000166|GO:0003676|GO:0003887
Spst9g01875 1115 PRINTS DNA-directed DNA-polymerase family B signature 678 690 IPR006172 GO:0000166|GO:0003676|GO:0003887
Spst9g01875 1115 PRINTS DNA-directed DNA-polymerase family B signature 739 747 IPR006172 GO:0000166|GO:0003676|GO:0003887
Spst9g01875 1115 ProSitePatterns DNA polymerase family B signature. 741 749 IPR017964 GO:0000166|GO:0003676
Spst9g01875 1115 FunFam DNA polymerase 815 971 - -
Spst9g01875 1115 SMART polmehr3 292 753 IPR006172 GO:0000166|GO:0003676|GO:0003887
Spst9g01875 1115 MobiDBLite consensus disorder prediction 1 25 - -
Spst9g01875 1115 CDD POLBc_delta 568 961 - -
Spst9g01875 1115 Gene3D DNA Polymerase, chain B, domain 1 88 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01875 Spst-Chr9 24720729 24734273 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01875 5 1085 Core DNA Replication Machinery Family AT5G63960 80.455 0.0 1850
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01875 K02327 - gmx:100817379 2056.57