Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01870 ATGAAAAAGGCCATCCCTGGCAACGGAAAAATCTCAAAGGATGCAAAAGAAACAGTTCAAGAGTGTGTGTCTGAGTTCATCAGTTTTGTCACAGGGGAAGCCTCAGACAAATGCCAAAGGGAAAAGAGAAAGACCATCAATGGAGATGACATCATTTGGGCCATCACCACCCTAGGTTTTGAGGACTACGTCGAACCTTTAAAATCCTATCTCCAAAAATATAAAGAGATTGAAGGAGAGAAGCTTAACCTTCCTAAACAACAACAACAACGTTCAGATCAAAGACTCCATCAACAGCAACATCCCCACCAGGACCAAAACAACAATCTACCTTGTGTATATTCCTCTACAACTCTCCTTTCTCAGCCTTCTTTTGTACCCACGGATCAACTATTTTCCCTCCCATTCTCCCCAAATTCGATTCAGAAACAGTTACAGCCGCCAGACCAGATCGATTCTTTGGGACAATGGTAA 474 0.4262 MKKAIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVEPLKSYLQKYKEIEGEKLNLPKQQQQRSDQRLHQQQHPHQDQNNNLPCVYSSTTLLSQPSFVPTDQLFSLPFSPNSIQKQLQPPDQIDSLGQW 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01870 157 PRINTS CCAAT-binding transcription factor subunit A signature 38 56 - -
Spst9g01870 157 PRINTS CCAAT-binding transcription factor subunit A signature 57 75 - -
Spst9g01870 157 PRINTS CCAAT-binding transcription factor subunit A signature 19 37 - -
Spst9g01870 157 MobiDBLite consensus disorder prediction 81 112 - -
Spst9g01870 157 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 108 IPR027113 GO:0001228|GO:0006355|GO:0016602
Spst9g01870 157 MobiDBLite consensus disorder prediction 83 112 - -
Spst9g01870 157 ProSitePatterns NF-YB/HAP3 subunit signature. 22 38 IPR003956 GO:0005634|GO:0006355|GO:0043565
Spst9g01870 157 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 1 55 IPR003958 -
Spst9g01870 157 MobiDBLite consensus disorder prediction 137 157 - -
Spst9g01870 157 SUPERFAMILY Histone-fold 1 103 IPR009072 GO:0046982
Spst9g01870 157 Gene3D Histone, subunit A 1 111 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01870 Spst-Chr9 24601480 24601953 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01870 1 157 CCAAT-HAP3 Transcription Factor Family AT2G13570 63.473 5.19e-58 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Spst9g01870 CBFD_NFYB_HMF 4.2e-21 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01870 K08065 - gmx:100778216 242.662