Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01858 ATGGAAGATGCAAGTTTCAACCTTCCTCCTGGGTTTTTCTTCTCTCCAACTGATGAAGAACTCGTTCTTCACTTTCTCTATTCTAAGGCTTCTCTTCTTCCATGCCATCCCAACATCATCCCCGACCTTGATTTCTCTCAGCTTGATCCTTGGGAACTAAATGGTAAGGCGTTGTTTAGTGGGAATCAATACTATTTCTTCACGAAAGTGAATGAAAACAGAACCACGGAAAATGGGTGTTGGAAGGAAATAGGTGTCACGGAACCTATATTGACAACTGTTGACAAGAAAGTGGGAATGAAGAAGTACTTGGTATTTCATATTGATGAAGAAGCTTCACATGGTACTGAAACCAATTGGGTAATGCAAGAATATCATATATGTTCTTCTGGGTTTGAGACTGTGTCATATGCAAGTGCCAGGAGAAGACGAAAACATGATCAAAGTTGGAGCAAGTGGGTTTTGTGCAGAGTGTATGAGAAGATGAGGTCTCAACAAGGTGTAATAAACTGCTGTACATGTAGCGATGACGATGAGAGTGGATCAGAGCTTTCATGGCTAGATGAAGTTTATCTGTCTTTGGATGATGATCTGGAAGAAATTGGCATGCCTAATTAG 618 0.4078 MEDASFNLPPGFFFSPTDEELVLHFLYSKASLLPCHPNIIPDLDFSQLDPWELNGKALFSGNQYYFFTKVNENRTTENGCWKEIGVTEPILTTVDKKVGMKKYLVFHIDEEASHGTETNWVMQEYHICSSGFETVSYASARRRRKHDQSWSKWVLCRVYEKMRSQQGVINCCTCSDDDESGSELSWLDEVYLSLDDDLEEIGMPN 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01858 205 ProSiteProfiles NAC domain profile. 8 161 IPR003441 GO:0003677|GO:0006355
Spst9g01858 205 Gene3D NAC domain 17 165 IPR036093 GO:0003677|GO:0006355
Spst9g01858 205 PANTHER NAC TRANSCRIPTION FACTOR 56 8 168 - -
Spst9g01858 205 Pfam No apical meristem (NAM) protein 9 127 IPR003441 GO:0003677|GO:0006355
Spst9g01858 205 SUPERFAMILY NAC domain 5 160 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01858 Spst-Chr9 24280126 24280990 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01858 7 177 NAC Transcription Factor Family AT1G61110 38.333 9.28e-37 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst9g01858 NAM 2.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01858 - - gmx:100170711 353.984