LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst9g01853	ATGAACGAAGCCCAAATTGAAATTACCATTCCTCACTTGTTCAGATGCCCCATCAGTTTGGACTTGTTCGAAGATCCAGTAACTTTGTCCACTGGCCAAACCTATGACAGATCAAGCATAGAGAAATGGTTCTCTGCTGGAAATCTCACATGCCCTGTAACAATGCAGAAACTTCATGATCTATCCATTGTTCCCAACCACACTCTTCGCCACTTGATCGACCAGTGGCTCCAATTGGGTCCCCAATTTGGTAACTCAGCCAATATTGATTATTTAGCTGCACTAAAGCACACCCTTGAATCTCCTGAGTTGGAAAACAAGCTCCAAGCACTTGAGAAAATTAGAGTTCTCTCCGATGAGTATTGCTTCTTCAGAAAATCTTGTTTCCACGAACTTAGTTTCTTGCCCCTACTCTTGGAACTAGTTTTTGGTACCGAGTTCTCAAAATGTCACATGGAGTTCACGGAGCTAGCACTTTCTTGCATTCTGAAGTTGTTGCCCCTTGTGAGTTTGGAGCCTCTAAATATGATCAAAGATGAGTCTAAGTTAACAACGTTCTTGCTACTATTTGAAAAGGGAACTAGCTCGGTTAAGACTACTCTTTGTCAACTTATAGATTCAACAGCATCACCGCAGACAGAAGAGGTATGTCACATGCTTGGACACTCTCAAAAACTGGTGCATGAAATTGTTGTACTTGTTCGCCAAGGTTGTGAGGTTTCTAAGGTTGCAATTAAGGCCATGTTAGCATTATGTTCCTTGAAATCTAACCGAGACAATTTAGTGAGGGCAGGAGCAATTGATGGGGTCATAATATACATTTCAGGTTGTGAAACAAGGCAGAAGAACTTGGCTCCATTGGCGATGGCAATAATAAAGAACCTTTTGGTGCTAGAGAGTGCTAAAGAGGCACTGGTGAATCACCCTAATGGGATTGAAACTTTGGTGAAGATGGTTTTCAGGGTGTGTAATCAAGAGTGTAGTGAGAGTGCTGTTGGAATACTTGGAATTGTTTGCCGTGATTTTGGGCGTGCAAGAGAGGAAGCAATTGGTGCTGGAGTTTTGACTCAGTTGCTGTTTCTTCTCCAGAGTCAGTGTGGCCCCAAAACTAAAACAAAAGCAAGAATGCTGCTCAAGTTGCTAAGATCAAAGTGGATTGAGGAACCAAAACAGGTGTAG	1179	0.4241	MNEAQIEITIPHLFRCPISLDLFEDPVTLSTGQTYDRSSIEKWFSAGNLTCPVTMQKLHDLSIVPNHTLRHLIDQWLQLGPQFGNSANIDYLAALKHTLESPELENKLQALEKIRVLSDEYCFFRKSCFHELSFLPLLLELVFGTEFSKCHMEFTELALSCILKLLPLVSLEPLNMIKDESKLTTFLLLFEKGTSSVKTTLCQLIDSTASPQTEEVCHMLGHSQKLVHEIVVLVRQGCEVSKVAIKAMLALCSLKSNRDNLVRAGAIDGVIIYISGCETRQKNLAPLAMAIIKNLLVLESAKEALVNHPNGIETLVKMVFRVCNQECSESAVGILGIVCRDFGRAREEAIGAGVLTQLLFLLQSQCGPKTKTKARMLLKLLRSKWIEEPKQV	392

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst9g01853	392	Gene3D	-	85	383	IPR011989	-
	Spst9g01853	392	SMART	Ubox_2	13	76	IPR003613	GO:0004842\|GO:0016567
	Spst9g01853	392	FunFam	RING-type E3 ubiquitin transferase	10	81	-	-
	Spst9g01853	392	PANTHER	WDSAM1 PROTEIN	7	389	IPR045185	GO:0061630
	Spst9g01853	392	ProSiteProfiles	U-box domain profile.	9	83	IPR003613	GO:0004842\|GO:0016567
	Spst9g01853	392	SUPERFAMILY	RING/U-box	6	78	-	-
	Spst9g01853	392	Pfam	U-box domain	10	78	IPR003613	GO:0004842\|GO:0016567
	Spst9g01853	392	CDD	RING-Ubox_PUB	11	58	IPR045210	-
	Spst9g01853	392	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	9	80	IPR013083	-
	Spst9g01853	392	SUPERFAMILY	ARM repeat	92	381	IPR016024	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst9g01853	Spst-Chr9	24094816	24095994	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst9g01853	8	385	U-box Gene Family	AT3G19380	33.659	7.04e-43	153

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst9g01853	-		-	gmx:100815247	692.189

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