Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01853 ATGAACGAAGCCCAAATTGAAATTACCATTCCTCACTTGTTCAGATGCCCCATCAGTTTGGACTTGTTCGAAGATCCAGTAACTTTGTCCACTGGCCAAACCTATGACAGATCAAGCATAGAGAAATGGTTCTCTGCTGGAAATCTCACATGCCCTGTAACAATGCAGAAACTTCATGATCTATCCATTGTTCCCAACCACACTCTTCGCCACTTGATCGACCAGTGGCTCCAATTGGGTCCCCAATTTGGTAACTCAGCCAATATTGATTATTTAGCTGCACTAAAGCACACCCTTGAATCTCCTGAGTTGGAAAACAAGCTCCAAGCACTTGAGAAAATTAGAGTTCTCTCCGATGAGTATTGCTTCTTCAGAAAATCTTGTTTCCACGAACTTAGTTTCTTGCCCCTACTCTTGGAACTAGTTTTTGGTACCGAGTTCTCAAAATGTCACATGGAGTTCACGGAGCTAGCACTTTCTTGCATTCTGAAGTTGTTGCCCCTTGTGAGTTTGGAGCCTCTAAATATGATCAAAGATGAGTCTAAGTTAACAACGTTCTTGCTACTATTTGAAAAGGGAACTAGCTCGGTTAAGACTACTCTTTGTCAACTTATAGATTCAACAGCATCACCGCAGACAGAAGAGGTATGTCACATGCTTGGACACTCTCAAAAACTGGTGCATGAAATTGTTGTACTTGTTCGCCAAGGTTGTGAGGTTTCTAAGGTTGCAATTAAGGCCATGTTAGCATTATGTTCCTTGAAATCTAACCGAGACAATTTAGTGAGGGCAGGAGCAATTGATGGGGTCATAATATACATTTCAGGTTGTGAAACAAGGCAGAAGAACTTGGCTCCATTGGCGATGGCAATAATAAAGAACCTTTTGGTGCTAGAGAGTGCTAAAGAGGCACTGGTGAATCACCCTAATGGGATTGAAACTTTGGTGAAGATGGTTTTCAGGGTGTGTAATCAAGAGTGTAGTGAGAGTGCTGTTGGAATACTTGGAATTGTTTGCCGTGATTTTGGGCGTGCAAGAGAGGAAGCAATTGGTGCTGGAGTTTTGACTCAGTTGCTGTTTCTTCTCCAGAGTCAGTGTGGCCCCAAAACTAAAACAAAAGCAAGAATGCTGCTCAAGTTGCTAAGATCAAAGTGGATTGAGGAACCAAAACAGGTGTAG 1179 0.4241 MNEAQIEITIPHLFRCPISLDLFEDPVTLSTGQTYDRSSIEKWFSAGNLTCPVTMQKLHDLSIVPNHTLRHLIDQWLQLGPQFGNSANIDYLAALKHTLESPELENKLQALEKIRVLSDEYCFFRKSCFHELSFLPLLLELVFGTEFSKCHMEFTELALSCILKLLPLVSLEPLNMIKDESKLTTFLLLFEKGTSSVKTTLCQLIDSTASPQTEEVCHMLGHSQKLVHEIVVLVRQGCEVSKVAIKAMLALCSLKSNRDNLVRAGAIDGVIIYISGCETRQKNLAPLAMAIIKNLLVLESAKEALVNHPNGIETLVKMVFRVCNQECSESAVGILGIVCRDFGRAREEAIGAGVLTQLLFLLQSQCGPKTKTKARMLLKLLRSKWIEEPKQV 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01853 392 Gene3D - 85 383 IPR011989 -
Spst9g01853 392 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Spst9g01853 392 FunFam RING-type E3 ubiquitin transferase 10 81 - -
Spst9g01853 392 PANTHER WDSAM1 PROTEIN 7 389 IPR045185 GO:0061630
Spst9g01853 392 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Spst9g01853 392 SUPERFAMILY RING/U-box 6 78 - -
Spst9g01853 392 Pfam U-box domain 10 78 IPR003613 GO:0004842|GO:0016567
Spst9g01853 392 CDD RING-Ubox_PUB 11 58 IPR045210 -
Spst9g01853 392 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 80 IPR013083 -
Spst9g01853 392 SUPERFAMILY ARM repeat 92 381 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01853 Spst-Chr9 24094816 24095994 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01853 8 385 U-box Gene Family AT3G19380 33.659 7.04e-43 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01853 - - gmx:100815247 692.189