Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01841 ATGGCCGCAGAAATTTGTGGCGCGTCTCTATTCTTATCCGTTAAAACTCAACTGCAACAACGACACCACCATCAACGCGCGTTCTTCCATGCTCATCGAAGCAGCACAAGAAGAGCCACTTCCAGATTCCACTCATCCAGAGGCTGCTTAAGTTCCGGCTTTCTAAATGCTTCCACTTTTAGCCGCGGCGTTGTGTGCCAGGTCGCCAGCTCCGATTTCGAATCCGCCGCCAAAGCCGGCGAGCATCGTCTCTCTAAGGTGCCGGTGCGTAATATAAGGAACTTCAGCATCATTGCGCATATTGACCACGGGAAATCGACGTTGGCGGATAAGTTGCTTCAGGTTACTGGCACGGTGCACCAGCGAGAGATGAAGGATCAGTTTCTCGATAACATGGATTTGGAGAGAGAACGAGGCATCACTATTAAGCTCCAGGCAGCTCGAATGCGTTATGTGTTTGAAAATGAACCTTATTGCTTGAATCTAATCGATACACCGGGGCATGTCGACTTCTCGTATGAGGTTTCTCGGTCACTTGCTGCATGTGAGGGTGCTCTTCTAGTAGTAGATGCTTCTCAGGGTGTTGAAGCACAAACACTAGCTAATGTTTATTTGGCTTTGGAGAACAACCTAGAAATTATCCCTGTTTTGAACAAAATAGATCTCCCAGGTGCAGAACCAGACCGAGTTATCAAGGAGATTGAAGAGATTGTAGGTCTAGACTGTAGCAACGCGATTCTCTGCTCTGCAAAGGAAGGAATAGGTATTATTGATATTCTCAATGCAATTGTTGCAAGAATTCCCCCACCTGAAGATACATCTAAAAGACCATTGAGGGCTTTAATATTTGACAGCTACTATGATCCATATAGAGGTGTTATTGTATACTTTCGAGTTGTAGATGGGTCTATAAAGAAAGGTGACAGAGTTTATTTTATGGCTAGTGGAAAGGATTACTTTGCTGATGAAATTGGAGTTTTGTCTCCCAATCAACTACAAGTTGAAGAATTGTATGCTGGTGAGGTAGGCTATCTATCTGCATCAATAAGAACAGTAGCTGATGCTAGAGTGGGTGACACTATTACTCACTACGGCAGAAAGGCTGATAATTCACTCCCTGGATACGAGGAAGCCACTCCTATGGTGTTCTGTGGCTTGTTTCCTGTTGATGCTGACCAATTCCCTGATCTGCGTGATGCACTTGAGAAGCTACAACTCAATGATGCTGCACTAAAGTTTGAACCTGAGACCTCGAGTGCCATGGGATTTGGCTTTAGATGTGGGTTTCTGGGTCTTCTTCATATGGAAATTGTTCAGGAGAGACTTGAGAGAGAATACAATTTGAGCTTGATAACAACTGCTCCAAGTGTTGTGTACAGAGTAAACTGTGTAAATGGTGATACTGTTGAATGCTCAAACCCATCTTTACTTCCTGAGCCTGGAAAGAGGAAATCAATTGAGGAGCCATTTGTTAAGATTGAGATGCTTACACCAAAAGAATACATTGGTTCACTTATGGAACTGGCACAAGAAAGAAGAGGACAGTTTAAAGAAATGAAATTCATTGCTGAAAATAGGGCATCAATTGTCTATGAATTACCATTAGCGGAGATGGTTGGCGATTTCTTTGATCAATTGAAGTCAAGAAGTAAGGGTTATGCTAGTATGGAGTATAACTTTGTTGGGTACATCGAAAGTAATTTAATTAAACTTGACATACGGATAAATGGTGACTGTGTGGAGCCATTGGCCACAATTGTGCACAATGATAAGGCATATTCTGTTGGAAGGGCTTTGACTCTTAAGTTGAAGGAGCTCATACCACGACAAATGTTTAAAGTACCAATTCAAGCATGTATAGGATCAAAAGTGATTGCCAGTGAAGCAATATCTGCAATCAGGAAGGATGTGCTAGCCAAATGCTACGTGTGCCCCCGACCCCATCCCACCCCGCCCATCATATTTTGGTGGGGATATTTCAAGAAAAAAGAAATTGCTCAAGAAACAGGCTGA 2013 0.4312 MAAEICGASLFLSVKTQLQQRHHHQRAFFHAHRSSTRRATSRFHSSRGCLSSGFLNASTFSRGVVCQVASSDFESAAKAGEHRLSKVPVRNIRNFSIIAHIDHGKSTLADKLLQVTGTVHQREMKDQFLDNMDLERERGITIKLQAARMRYVFENEPYCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPDRVIKEIEEIVGLDCSNAILCSAKEGIGIIDILNAIVARIPPPEDTSKRPLRALIFDSYYDPYRGVIVYFRVVDGSIKKGDRVYFMASGKDYFADEIGVLSPNQLQVEELYAGEVGYLSASIRTVADARVGDTITHYGRKADNSLPGYEEATPMVFCGLFPVDADQFPDLRDALEKLQLNDAALKFEPETSSAMGFGFRCGFLGLLHMEIVQERLEREYNLSLITTAPSVVYRVNCVNGDTVECSNPSLLPEPGKRKSIEEPFVKIEMLTPKEYIGSLMELAQERRGQFKEMKFIAENRASIVYELPLAEMVGDFFDQLKSRSKGYASMEYNFVGYIESNLIKLDIRINGDCVEPLATIVHNDKAYSVGRALTLKLKELIPRQMFKVPIQACIGSKVIASEAISAIRKDVLAKCYVCPRPHPTPPIIFWWGYFKKKEIAQETG 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01841 670 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 90 271 IPR000795 GO:0003924|GO:0005525
Spst9g01841 670 CDD LepA 93 270 - -
Spst9g01841 670 FunFam Translation factor GUF1, mitochondrial 273 371 - -
Spst9g01841 670 Pfam Elongation factor Tu GTP binding domain 91 268 IPR000795 GO:0003924|GO:0005525
Spst9g01841 670 CDD EF4_II 278 363 - -
Spst9g01841 670 NCBIfam small GTP-binding protein domain 93 262 IPR005225 GO:0005525
Spst9g01841 670 Pfam Elongation factor Tu domain 2 292 362 IPR004161 GO:0005525
Spst9g01841 670 Pfam Elongation factor G C-terminus 486 570 IPR000640 -
Spst9g01841 670 SUPERFAMILY Translation proteins 252 374 IPR009000 -
Spst9g01841 670 Gene3D - 455 565 - -
Spst9g01841 670 CDD lepA_C 488 567 IPR035654 -
Spst9g01841 670 PANTHER TRANSLATION FACTOR GUF1-RELATED 68 642 IPR006297 GO:0005525
Spst9g01841 670 FunFam Translation factor GUF1, mitochondrial 567 641 - -
Spst9g01841 670 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 130 145 IPR031157 -
Spst9g01841 670 SUPERFAMILY EF-G C-terminal domain-like 379 457 IPR035647 -
Spst9g01841 670 FunFam Elongation factor 4 89 272 - -
Spst9g01841 670 Gene3D - 567 641 IPR038363 -
Spst9g01841 670 CDD EF4_III 380 455 - -
Spst9g01841 670 PRINTS GTP-binding elongation factor signature 137 145 IPR000795 GO:0003924|GO:0005525
Spst9g01841 670 PRINTS GTP-binding elongation factor signature 213 222 IPR000795 GO:0003924|GO:0005525
Spst9g01841 670 PRINTS GTP-binding elongation factor signature 161 171 IPR000795 GO:0003924|GO:0005525
Spst9g01841 670 PRINTS GTP-binding elongation factor signature 177 188 IPR000795 GO:0003924|GO:0005525
Spst9g01841 670 PRINTS GTP-binding elongation factor signature 94 107 IPR000795 GO:0003924|GO:0005525
Spst9g01841 670 FunFam Translation factor GUF1, mitochondrial 455 565 - -
Spst9g01841 670 SMART EFG_C_a 485 573 IPR000640 -
Spst9g01841 670 Gene3D Elongation Factor G (Translational Gtpase), domain 3 373 454 - -
Spst9g01841 670 SUPERFAMILY EF-G C-terminal domain-like 486 580 IPR035647 -
Spst9g01841 670 Gene3D Translation factors 273 372 - -
Spst9g01841 670 Gene3D - 89 272 IPR027417 -
Spst9g01841 670 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 87 288 IPR027417 -
Spst9g01841 670 Hamap Elongation factor 4 [lepA]. 87 670 IPR006297 GO:0005525
Spst9g01841 670 FunFam Translation factor GUF1, mitochondrial 373 454 - -
Spst9g01841 670 Pfam GTP-binding protein LepA C-terminus 575 642 IPR013842 -
Spst9g01841 670 NCBIfam translation elongation factor 4 91 642 IPR006297 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01841 Spst-Chr9 23415632 23432790 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01841 90 325 Eukaryotic Initiation Factors Gene Family AT3G22980 33.735 1.23e-25 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01841 K21594 - gmx:100809693 1176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01841 9 23415632 23432790 Spst9g01841 9 23415632 23432790 ECH