Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01834 ATGTCTAGTGGTCTCTGTATTGAACTGAGGCTTTATATGTCAATGCCGCTTTTGAGGAGAAAGCATTTTGCCTTGACTGAGCCACCTAATGATCTGGTGCCAGGAGAGAGTCTCTTTCAAATTCGGTTTACCAAAGAAATATTCCGAGATTATAATGATTATTTGAAACGATTAAATCAATACCGTCAGAGGGTTTGGACATGCAAAGTAACTGGAAAAACTGGCTTAACTTATGAAGAGGCGCTGGTGTCAGAGAAGCATGCTACTGGGAAAGTTCAACAGATTCCGGAAGAATTAGTCGCACCTGCACTTAGGATTATTCAGTACAGCATGCTCCCTTTGAAGGATCTTGCTGATTCTATTGCTGAAAAGTTGCAGAAGTTGTTTGTGGGCTCTCAATTGTATGGAAAAAAGAATGACAGACTGCTTCCTTGCAAAATATTAAAGGCGATGCAGGAAGATGCTGAAAATGTCAGCTATCTGGTCGCTTGGCTTGATGAAAGCAATAATGTTATTGAAAGAGCAGAAGTCAGTTCTCGAGATTTGGTACAGAAGAAGCCACCTTTTAGTAGAAATCTTTTGAAGTATTTTATCCGTGAATGTACATATCAAAATGCTCCTTGGGTTTTACACGATAAACTTGCAAAAAAACATGGAATCTCAACTGACATTCCAGAGGAGTTAAGGGGAAAGGTTTCCATTAACAATGGACTTGTGGTCTTCACTAAAAAAAGAAAAAATGAGGAAGAGTCAATCAAATATCCAATTGATGATCTATTAGTGAAGCCTAGTCCAGATGATCCTGTTTTCAGTAGTCGTCCTTCTCCATCAAGAGACTTTAATGTTCCAATTTATTGTGTAGGGGATCTCTTAATGGTTTGGGATTTTTGTATGTCTTTTGGTAAACTGCTACGATTGTCGCCTTACTCGCTCAAAGATTTTGAAAATGCAATCAGCCACAAGGATAGCAATGTAGTTCTCCTAGTGGAATCTCATGCAGTACTCTTTCGTGTGCTCATCAAAGGCAATTATGAATACTCTGCAGCTGTTCAAGAAAAATTACGGAAGAAGATTACAATGATTAGTTGGAAAGACTATTTATGTGAGTTTTTAGAAATGATCAAAATTCCCAAGCTGCTGCAGTACGAAGCAACAATTAAACGGGGACATTATGGCTACATAGATGTCAATGCTAAAATAGAAATCTTTCGTGAGTTAGTCAATCGAGCCCTTGATACTGCTACTGTCAGGGAAAAATTGGATGACTTTATTGAACAAAGGCGGGTACTGGGGGCTGCTAAAAGGGAAGAAGCAATTCAAGCTGCTGCGAAGAAAAGAAAAGTAAACGAGCACTTGAAAGCTGATTCTGGAAGCGAATCTGGTCAGAATGGGCATCATCTTGATCAGAGTGCAACCGTTTCAATGAATAATAATCACAGTATACAGAATGGTACTATTGGAAAAAATAGAATCAGAGAGATAGAATCATCTTGGCAAAAAGATGTATTGGATAGTGGTATCAAGTCTTCAAACCTTGCTTCAAAAATGTCAGCTGAAATGTTTGATTCAGAGCTGAATCAATTAGCAGAAATTGGAAAAGTATCCAGAAAGGAATCACAGAAACAACCGAAGGGTGATAAGGATCAACCAGAGAAAAACAACGAACAAAGGAGAGAATATTTTGATCGGGAGATAGAGAAATGGTGTATTCGTACAAGTTTCCTAGGTATGGACAGATATTATAATAGGTATTGGTGGTTTTACCGCGATGGAAGGATATTTGTCGAAAGTCCTGAATCCAAGGAGTGGGGATACTACAGTAGCAAGGGAGAGCTTGATGGATTGATGAGTTCACTGAATTGCAAAGGCGAGAGGGAAAGGACACTGCTAAAACAACTGAAAAAATATTATAGTAGAATATGCTCAGAACTGGAGAAAAATTCAAAGGATTTGATGCATAAGATTAGCCTGGATGACTCTGTGGTCCGAAGGTCTACTCGTGTTCGCGCTCCACCTAGGGAAAATCCTGCCAAAGCTTTCCTCAGATATGTAAACAAGTGGAAAGAAGAGTAA 2073 0.3898 MSSGLCIELRLYMSMPLLRRKHFALTEPPNDLVPGESLFQIRFTKEIFRDYNDYLKRLNQYRQRVWTCKVTGKTGLTYEEALVSEKHATGKVQQIPEELVAPALRIIQYSMLPLKDLADSIAEKLQKLFVGSQLYGKKNDRLLPCKILKAMQEDAENVSYLVAWLDESNNVIERAEVSSRDLVQKKPPFSRNLLKYFIRECTYQNAPWVLHDKLAKKHGISTDIPEELRGKVSINNGLVVFTKKRKNEEESIKYPIDDLLVKPSPDDPVFSSRPSPSRDFNVPIYCVGDLLMVWDFCMSFGKLLRLSPYSLKDFENAISHKDSNVVLLVESHAVLFRVLIKGNYEYSAAVQEKLRKKITMISWKDYLCEFLEMIKIPKLLQYEATIKRGHYGYIDVNAKIEIFRELVNRALDTATVREKLDDFIEQRRVLGAAKREEAIQAAAKKRKVNEHLKADSGSESGQNGHHLDQSATVSMNNNHSIQNGTIGKNRIREIESSWQKDVLDSGIKSSNLASKMSAEMFDSELNQLAEIGKVSRKESQKQPKGDKDQPEKNNEQRREYFDREIEKWCIRTSFLGMDRYYNRYWWFYRDGRIFVESPESKEWGYYSSKGELDGLMSSLNCKGERERTLLKQLKKYYSRICSELEKNSKDLMHKISLDDSVVRRSTRVRAPPRENPAKAFLRYVNKWKEE 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01834 690 MobiDBLite consensus disorder prediction 532 557 - -
Spst9g01834 690 Pfam DDT domain 286 341 IPR018501 -
Spst9g01834 690 SMART testlast3 284 345 IPR018501 -
Spst9g01834 690 ProSiteProfiles WAC domain profile. 36 141 IPR013136 -
Spst9g01834 690 ProSiteProfiles DDT domain profile. 284 345 IPR018501 -
Spst9g01834 690 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN, 2A 246 688 - -
Spst9g01834 690 MobiDBLite consensus disorder prediction 455 488 - -
Spst9g01834 690 MobiDBLite consensus disorder prediction 445 488 - -
Spst9g01834 690 MobiDBLite consensus disorder prediction 534 557 - -
Spst9g01834 690 Pfam ATP-utilising chromatin assembly and remodelling N-terminal 38 130 IPR013136 -
Spst9g01834 690 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 570 636 IPR028941 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01834 Spst-Chr9 22645733 22650313 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01834 286 367 Homeobox Transcription Factor Family AT1G28420 33.654 1.24e-06 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Spst9g01834 WAC_Acf1_DNA_bd 1.4e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01834 - - gmx:100784607 1064.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01834 9 22645733 22650313 Spst9g01834 9 22645733 22650313 ECH
Spst3g01246 3 15950435 15955641 Spst9g01834 9 22645733 22650313 PCT