Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01781 ATGGAGAGAAGATCACATTCGGCTGAAAGAGAAGAGGAAGATGATCTGTTCCCAGTATACTCGGAAAGGTCACAGCAAGACATGTCAGCCATGGTCTCTGCCCTCACACAAGTCATAGGTGGCTCCAACAACGATTCTCTTCACCTTGAAGACCTTTTAACTTCTTCCCACAACACCTCATCCCAGAATAGTAATGAACAATCTCAATTGCCACAACAAGATCAAGTCCCAAGTAAAATTCTGAATTGTGAAGGGAGTGGAAGAAGAAGACACTATAGAGGAGTGAGGCAGCGTCCATGGGGAAAATGGGCTGCAGAGATTCGTGATCCGAAGAAGGCAGCGAGGGTGTGGCTTGGAACTTTCGAAACTGCAGAAGCTGCAGCTCTTGCTTACGATGAAGCTGCTCTCAGATTCAAAGGAAGCAAAGCCAAGCTCAATTTCCCTGAGAGGGTTCAAGGAACTGGCGAATTTGGTTATCTCACAAATCAACACCTCTCATCAACCAGCACCAGCAGTGACCAAGCTTCCAACCCTGTTGCTCCACACATCACTCAAGAAACATATTCACCAAGTCACTATCACTATCCACAACAGATCATTGATGGTGGTGGAAGTAACAGCTTCAATAATCAAGACATGCTTCGTTTCTATGGGGGAGACATGTTTGTTTCTTCTCAGCCAGCTGCATCTTCGTCTTCTTCCACTGCTCTCTCTCAGCAGCAAGAAGAGTTTCTGAGATTTTCGATGCAGTTCGGAGGCGCTTCTTCTGAGCCTCCTAGGAATTGGAGGGGTGATGGATACTGA 804 0.4652 MERRSHSAEREEEDDLFPVYSERSQQDMSAMVSALTQVIGGSNNDSLHLEDLLTSSHNTSSQNSNEQSQLPQQDQVPSKILNCEGSGRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEAAALAYDEAALRFKGSKAKLNFPERVQGTGEFGYLTNQHLSSTSTSSDQASNPVAPHITQETYSPSHYHYPQQIIDGGGSNSFNNQDMLRFYGGDMFVSSQPAASSSSSTALSQQQEEFLRFSMQFGGASSEPPRNWRGDGY 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01781 267 Pfam AP2 domain 91 140 IPR001471 GO:0003700|GO:0006355
Spst9g01781 267 PRINTS Ethylene responsive element binding protein signature 92 103 IPR001471 GO:0003700|GO:0006355
Spst9g01781 267 PRINTS Ethylene responsive element binding protein signature 114 130 IPR001471 GO:0003700|GO:0006355
Spst9g01781 267 Gene3D AP2/ERF domain 90 150 IPR036955 GO:0003700|GO:0006355
Spst9g01781 267 MobiDBLite consensus disorder prediction 1 20 - -
Spst9g01781 267 MobiDBLite consensus disorder prediction 53 78 - -
Spst9g01781 267 SUPERFAMILY DNA-binding domain 91 149 IPR016177 GO:0003677
Spst9g01781 267 FunFam Ethylene-responsive transcription factor 2 90 149 - -
Spst9g01781 267 ProSiteProfiles AP2/ERF domain profile. 91 148 IPR001471 GO:0003700|GO:0006355
Spst9g01781 267 MobiDBLite consensus disorder prediction 1 23 - -
Spst9g01781 267 SMART rav1_2 91 154 IPR001471 GO:0003700|GO:0006355
Spst9g01781 267 PANTHER DNA-BINDING DOMAIN 46 224 IPR044808 GO:0003700|GO:0009873
Spst9g01781 267 CDD AP2 91 149 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01781 Spst-Chr9 20082605 20084341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01781 15 163 AP2-EREBP Transcription Factor Family AT5G61890 63.636 2.74e-56 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst9g01781 AP2 3.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01781 - - gmx:100799190 332.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01781 9 20082605 20084341 Spst9g01781 9 20082605 20084341 ECH
Spst1g00250 1 3436212 3439012 Spst9g01781 9 20082605 20084341 ECH
Spst3g01198 3 15525370 15525846 Spst9g01781 9 20082605 20084341 ECH
Spst9g01781 9 20082605 20084341 Spst1g00250 1 3436212 3439012 ECH
Spst3g01198 3 15525370 15525846 Spst9g01781 9 20082605 20084341 PCT