Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01762 ATGGCAACAGATCAACAGAACATCATCCTCCACGATCATCATCACCAAATTCCAATGGGTGTTGGAATTTGGTCCAATCACCACCACCCCTTTCACACGCAACCCTCTTCCTCTTCTTCAACTAGTAATTTCCTAACGGAGGTGTTAGGGATTCAGTTTGAAGAAGAGGAAGAGGAAGAGCTTGGAGCGATGAAGGAGATGATGTACCAAATGGCAGCGATGCAACCGGTGGACATAGACCCTGCCACGGTCAGAAAACCAAAGAGGCGAAACGTGCGCATAAGCGATGACCCTCAGAGTGTGGCTGCACGCCACAGAAGAGAGAGGATCAGTGAGAAAATCCGTATCCTCCAAAGACTTGTCCCTGGTGGCACCAAAATGGACACTGCTTCCATGCTTGATGAAGCCATTCGCTATGTCAAGTTCTTGAAGAGGCAAATCAGGTTGCTTCAATCAACTCCACCACAAATTGATTGTATTAATGGTGCTGCTCCTAACAGTGATTGGCCTTTTGTGCCAATTACATTGCACGGTTCTACCTTCATGAACGTGCCTCCTGGAATCGAATTCAACGACAGAATTCATGGGCATGCCGTTGATTCGATCCACCTTCAACATTCATGA 624 0.4712 MATDQQNIILHDHHHQIPMGVGIWSNHHHPFHTQPSSSSSTSNFLTEVLGIQFEEEEEEELGAMKEMMYQMAAMQPVDIDPATVRKPKRRNVRISDDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSTPPQIDCINGAAPNSDWPFVPITLHGSTFMNVPPGIEFNDRIHGHAVDSIHLQHS 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01762 207 SMART finulus 100 149 IPR011598 GO:0046983
Spst9g01762 207 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 94 143 IPR011598 GO:0046983
Spst9g01762 207 FunFam BHLH transcription factor 97 159 - -
Spst9g01762 207 Pfam Helix-loop-helix DNA-binding domain 104 143 IPR011598 GO:0046983
Spst9g01762 207 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 28 163 IPR045843 GO:0003700|GO:0006355
Spst9g01762 207 CDD bHLH_AtIND_like 95 152 - -
Spst9g01762 207 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 99 157 IPR036638 GO:0046983
Spst9g01762 207 Gene3D - 97 158 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01762 Spst-Chr9 19487661 19488284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01762 63 151 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00120 83.146 8.42e-48 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst9g01762 HLH 8.9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01762 - - var:108331264 293.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01762 9 19487661 19488284 Spst9g01762 9 19487661 19488284 ECH
Spst3g01320 3 16649806 16650639 Spst9g01762 9 19487661 19488284 PCT