Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01761 ATGAGGGAGGTGTGTAAACTGGGGGAAAGCATAGACTCATGCAGTAAATTGGAGAGAAATTTGGTGGAAGTTAGACTTTCAGATGGTGAGATGAGTGGAAGTGGCAAAAAGCGCTCTTCAAAGTGGGATTTGAGAGTTGATCCTGAATTTTCACCTGAGGATAATAAGCAATTAAGGTCTGGGTGGTCCTCTGCAGATGTTGCTGGTGGGAATAGTTCGAAGTGGTCATATTTGGAGGGAAGTGATAAAGTAAAGCCCGGTATGGGATTTTCATCCAAGGAACCTTTTTCTGGAGGCAGAGGTTCACATAAGGAAGATGTTATGAATAAAGACTACGTAGGTTTGGATGCATCAATGGAATGGGATGAGGATGGAAACTACAGCAAGAAAATGTCTCCTGGATCTGAGGAATGGAAGCATAAGAGACATAGTCAATCCCCTCAAAATGGTTGGAGCAGGTCAGTCAGGAGTCGAAGCAGGAGCCCTCCTCATGGTTTTAAGTGGGATTCAGGAGTCAATGACAGAAACAGAATGCGGGCTGGAGGATCTACTCAACCATGTAGAGATTTTGCAGCTGGTAAATGCAGAAGAGGCAGCCATTGCCATTTTCTTCATCATGATAATCAAAACCATGAAGATAGTTGGGAAAATAAGTGCAGGGAAGATGGAGCTCCTAGATATTCTACTCCCCATGAGGGTAGAGACTATTCTCTTAAAAGTGGCAGATCTAATGAAGCTTGTACTAATTTTGCAAAAGGCAGGTGTAGAATGGGAGCATCATGCAAGTTTGTGCATCATGAGAATTCTGATGGACATGGTAAAGTTTCTGGGGATGAATTAACTAGAGAGAAGGAAATTGATAGAAGGCACAGAGATACTTCATTTGAGCAGGGTGGCGGGCATGGGCCAAACCGAAGTGGTGATACTCTTTGCAAATTTTTTGCTAATGGAAATTGTCGAAATGGTAAGTATTGTAGATTTTCTCATGATAGGCAAGCATGTAGGAGTCCTAATAGAAGATTAAGAGATGATAGGTGGACAAGCAATCCAGGGGGAGATCACCATAGACTGGATAGATCGAAATTCAGTGATTCAGATAGTCCTAATAGAAGGCCAAGGGATGATAGGTGGGGTTCTGATGGTAACAAGGCTGATGCAGATAAAGTTTGGGAGAGTCCAAAGTGGAATGATACAGTTGCTGTCTCTGATTCAGCAAAGCTGGTTGAGGACAAAAGTGAAAATGTGGGTGCTGCAGAGCCAGGATTCACTCCTTTACCTACAAGGTATGGATGGAGTCATAGTTTGGATAAGAGCAGAGTGCATGGCGAGCAGCCCTTTCCAAGTGATAAGAAGGAAGCTGACAGTTGGATATCAGGAAATGCTGCAGCCAACATGCATGTTTCCCAGTCAATAGGTACTGATATCTGGTTAGGTGATACCAAAATGTCTCCTGATTGGCATTACAGGGTGGGATCCTCCAGCAGTATTGAAGAAAAACATGAACAAAATAAGCGTGGGATAACACAAGGTGGTACATATTTACCCACGTCTGAACATGACAGAATACAAATTGCTTCAGGACAAAGCATTAATCAGAATACTGAGAGTTTGAATCCTTTGCATTCTTCAAGCCGCCAGGCAGTTGGACAAAGTCAATTACCAGTTCCAGTTCTACCTTCAAAGGGAGGAATTATTGATGGAATGCCGAACCAGGAAGTCTCTACTGAGAAGAAATACACTTCTGAACCAAATATCATGGATGCAAGCTTATCACAAGCTAGTTCAAGAAATCCTCCTCCAACTGAGAACGTTGTTGGCCAAGAACAACTTGCGCAGCTTACCAATCTCTCAGCCTCGCTTGCCCATATCCTTGGGTCAGGGCAACAGCTGCCACAACTTTATGCTGCTTTAAATTCTCACTATGTAAAGGACACATCCTCCCTAGCAAAGGCTGAGGTGCCTGCTGTGCCTGTTTCCAATACGATCATGAGGCCAGATCCTGTTCTTGGACTCCCAAAGCAGTATGATCCAATGTGTGATAGTGTTGAGCCAAAGAGTGCTGTTGCAAGTGGGGTACTCCCATCCATTCCTCCAAGTACCAAAGTTGCAGAAGATGTAGTTGAAATTCCATCACAGTTGTCCAACAGTGCAAGACAAAATCATGGTGATTCTTCTAAGGCTGCTCGCTCAGAAGAACTTGTCAAGAGTGATCCTCTAATCCAGTTGCAATCAGGTCAAAGCACGGGGGTTGATAAGGATAATAATAAGGAAGTGTTACCTGGGGAAAGATGCAAAGCTCGAGATGACGCCAAAAGTACCAAAGAGAATGGTCCTCTGGAAAACGTGGAGCAAACTGGAGGTCCTGATGAGGCCAGGAAAACAAAGGATTTGAAGGGGATTCGTGCATTTAAATTTGCACTGGTTGAGTTTGTTAAGGAGCTTCTGAAACCAACATGGAAAGAAGGTCAAATCACCAAAGAAGATTATAAAACAATTGTGAAGAAAGTCGTAGATAAAGTAACCGGTTCCATGCAGGGGGCCAATATTCCTCAGACACAGGAGAAAATTGACAACTATTTGTCATTTTCAAAACCAAAGCTTAACAAACTTGTACAGGCGTATGTGGAAAAGGTTCAGAAGGCTTAG 2646 0.4331 MREVCKLGESIDSCSKLERNLVEVRLSDGEMSGSGKKRSSKWDLRVDPEFSPEDNKQLRSGWSSADVAGGNSSKWSYLEGSDKVKPGMGFSSKEPFSGGRGSHKEDVMNKDYVGLDASMEWDEDGNYSKKMSPGSEEWKHKRHSQSPQNGWSRSVRSRSRSPPHGFKWDSGVNDRNRMRAGGSTQPCRDFAAGKCRRGSHCHFLHHDNQNHEDSWENKCREDGAPRYSTPHEGRDYSLKSGRSNEACTNFAKGRCRMGASCKFVHHENSDGHGKVSGDELTREKEIDRRHRDTSFEQGGGHGPNRSGDTLCKFFANGNCRNGKYCRFSHDRQACRSPNRRLRDDRWTSNPGGDHHRLDRSKFSDSDSPNRRPRDDRWGSDGNKADADKVWESPKWNDTVAVSDSAKLVEDKSENVGAAEPGFTPLPTRYGWSHSLDKSRVHGEQPFPSDKKEADSWISGNAAANMHVSQSIGTDIWLGDTKMSPDWHYRVGSSSSIEEKHEQNKRGITQGGTYLPTSEHDRIQIASGQSINQNTESLNPLHSSSRQAVGQSQLPVPVLPSKGGIIDGMPNQEVSTEKKYTSEPNIMDASLSQASSRNPPPTENVVGQEQLAQLTNLSASLAHILGSGQQLPQLYAALNSHYVKDTSSLAKAEVPAVPVSNTIMRPDPVLGLPKQYDPMCDSVEPKSAVASGVLPSIPPSTKVAEDVVEIPSQLSNSARQNHGDSSKAARSEELVKSDPLIQLQSGQSTGVDKDNNKEVLPGERCKARDDAKSTKENGPLENVEQTGGPDEARKTKDLKGIRAFKFALVEFVKELLKPTWKEGQITKEDYKTIVKKVVDKVTGSMQGANIPQTQEKIDNYLSFSKPKLNKLVQAYVEKVQKA 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01761 881 SMART c3hfinal6 305 331 IPR000571 GO:0046872
Spst9g01761 881 SMART c3hfinal6 242 267 IPR000571 GO:0046872
Spst9g01761 881 SMART c3hfinal6 181 207 IPR000571 GO:0046872
Spst9g01761 881 SUPERFAMILY CCCH zinc finger 307 330 IPR036855 GO:0046872
Spst9g01761 881 MobiDBLite consensus disorder prediction 491 514 - -
Spst9g01761 881 MobiDBLite consensus disorder prediction 266 307 - -
Spst9g01761 881 MobiDBLite consensus disorder prediction 25 108 - -
Spst9g01761 881 MobiDBLite consensus disorder prediction 737 753 - -
Spst9g01761 881 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 31 880 - -
Spst9g01761 881 MobiDBLite consensus disorder prediction 145 159 - -
Spst9g01761 881 MobiDBLite consensus disorder prediction 533 553 - -
Spst9g01761 881 MobiDBLite consensus disorder prediction 122 144 - -
Spst9g01761 881 ProSiteProfiles Zinc finger C3H1-type profile. 181 208 IPR000571 GO:0046872
Spst9g01761 881 ProSiteProfiles Zinc finger C3H1-type profile. 305 332 IPR000571 GO:0046872
Spst9g01761 881 Pfam CCCH-type zinc finger 310 330 IPR041367 -
Spst9g01761 881 MobiDBLite consensus disorder prediction 409 428 - -
Spst9g01761 881 MobiDBLite consensus disorder prediction 336 391 - -
Spst9g01761 881 MobiDBLite consensus disorder prediction 755 776 - -
Spst9g01761 881 ProSiteProfiles Zinc finger C3H1-type profile. 241 268 IPR000571 GO:0046872
Spst9g01761 881 MobiDBLite consensus disorder prediction 266 296 - -
Spst9g01761 881 Gene3D - 177 280 - -
Spst9g01761 881 MobiDBLite consensus disorder prediction 711 793 - -
Spst9g01761 881 Pfam RNA-binding, Nab2-type zinc finger 246 265 - -
Spst9g01761 881 MobiDBLite consensus disorder prediction 122 185 - -
Spst9g01761 881 MobiDBLite consensus disorder prediction 56 78 - -
Spst9g01761 881 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 184 206 IPR000571 GO:0046872
Spst9g01761 881 Gene3D - 300 369 - -
Spst9g01761 881 MobiDBLite consensus disorder prediction 25 54 - -
Spst9g01761 881 MobiDBLite consensus disorder prediction 533 581 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01761 Spst-Chr9 19477422 19483063 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Spst9g01761 zf-CCCH 0.00012 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01761 - K22909 gmx:100783856 1414.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01761 9 19477422 19483063 Spst9g01761 9 19477422 19483063 ECH