Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01754 ATGCTAAGAGGTGACAATGATGTATACTATGATCCATCTTATCAGATATGGAAATTGCTTGACCACACTCTCTTCAGCATTGTCACAACACTTATGCTTGATGTTGGCATATTCTTTTCATGTAACAGTTCTTCTCCATCAGCAAGAGAAACTTGGTCCCTTGATTTGAGGGGTGTGGTGTGGTATTTAAGGTGTCGCAAAAGCACGGAATTTGATAGTGAAGGGAAGGATTGTTTCTCACCAACCCAAGAGTCTTCTTTGACAGCAAAAGTGTTGGGTTATGAGATTTGGGTGAATGAGCCTGTGAGTGTGAAGGAAAGAAGGGAAAAGTTTTTGCAGGGGATGGGGTTGGATGATGGCTCTTCCAAGGTTTGTTCTCAAGGGAATAATATGATGAATTCTGATGACTTATCAGTGAGATTTGGACTGGAAAGTATCAGCGATAGAGGGGCAGTTTCAAATACTTGTAGTTGTATTTTGTCTTATGATCAGATTTCTGACGAGTTGGTTCTCTCGGGAAGGGAAGCAACTTCTGAGGCACAAGACTTGTTTGGCACACAGAAAGGAGGCCCCAAAGATGAACCAGAGGCAAGTTTTGAAGGGAAGGTTTATGAGGTTTCTTTTACAGATCAAGAGGTTAGACATAGAAAAGCTGAGGCTCGAAAAGAAGAGAAGAAAAGTTGGTGGAAGCACTTTATAAGCAACAAGAAAGGAGGTTGGCGGAAAGTCAGATCAAAATTGAATTCAGGGCAAAATAAAACTCGTAGAATAAATGTAAAACAGAATAAGAAGAGGTGGATGGAGTTAAGTGCACTGTATATTGGACAAGAGATTAGAGCTCACAAAGGCCTAATTTGGACCATGAAGTTTAGTCCCAATGGCCAATATCTAGCTAGTGGAGGTGAAGATGGTGTTATACGCATATGGAGTGTGACATCATTGAATACATCTAGTATTTGCTTCAATGCAGAAGACAGTGCTGTAAGCCAAGTCAAACATGGCTCCTCTTGTTCTCGGAAGAAACCCTCAAGCCAATCCTTCGTTGTTCTTCCTAACAAGATTCTGAAAATCGAGGAATCACCATTGCATGAATTTTATGGTCACACCAGCGATGTCTTGGATTTAGCTTGGTCCAATTCAGATACTCTCCTTTCATCTTCTTCGGATAAAACTGTTCGCTTGTGGAAAATTGGTTCTAATCAATGTCTATGTGTTTTCCGGCACAATGACTATGTGACTTGTATTCAATTCAACCCCGTTGACGAAAATTACTTCATCAGTGGTTCCATCGATGGCAAGGTCCGAATATGGGGGATACATGAGGAGCGAGTTGTTGACTGGGCAGACATACGAGATGTGATAAGTGCTATAAGTTACCGACCAGATGGACAAGGGTTTGTAGTCGGTTCCCTCGCAGGCACTTGCCGCTTTTATGTTTCCTCAGGCAAACATTTCCAGCTTGATGCCCAAATTCGTGTCAAAGGAAAGAAGAGAGCATCTGGCAACAAGATTACAGGCATTCAGTTTTCTCAGAAAAACAATCAGAGAGTTATGATTACATCTGAAGATTCCAAAGTTAGAATATTGGAAGGCATTGAACTTGTTCAAACATACAAAGCTCTTCCAAGGTCTGGAAGTCAGATGTCTGGCTCATTTACCTCAGATGGAGAACATATAATCTCAGTCGGAGGGGACTCTCGTGTGTATATTTGGAACTTCAATGACTTGGAAAATACTTCTTCCAAAAGTACAAAATCCAAGTATTCCTGTGAGTACTTTGGCTCTCAAGGGGTTACTATTGCAATACCTTGGTCCAGCATGACTGCAGAACAAAGGGGTTCTGGCAATGATTTTGCTCACTATTCTTCAGAAATGCAGCACCAACTAGAGGCTGCTCACGGTGTTAGGGAATCGGAACGTTTTTCTTTTGGAAGTTGGTTCTCCATTGATGGTACATGCCGGGGTTCAATGACGTGGCCCGAAGAGAAGCTTCCTAGTTGGGATTTACCTCTTGCAAAAGTTGAATTTGAACACCAGAAGCTAAGTGTCAAAGATCCTTCCCATGAAAAATATGCATCAGAAACATGGGGACTATCCATTGTGGCAGCAGATTGTGATGGAACCATCAAGACATTCCACAACTTTGGACTTCCTATTAGGCTTTAG 2166 0.4178 MLRGDNDVYYDPSYQIWKLLDHTLFSIVTTLMLDVGIFFSCNSSSPSARETWSLDLRGVVWYLRCRKSTEFDSEGKDCFSPTQESSLTAKVLGYEIWVNEPVSVKERREKFLQGMGLDDGSSKVCSQGNNMMNSDDLSVRFGLESISDRGAVSNTCSCILSYDQISDELVLSGREATSEAQDLFGTQKGGPKDEPEASFEGKVYEVSFTDQEVRHRKAEARKEEKKSWWKHFISNKKGGWRKVRSKLNSGQNKTRRINVKQNKKRWMELSALYIGQEIRAHKGLIWTMKFSPNGQYLASGGEDGVIRIWSVTSLNTSSICFNAEDSAVSQVKHGSSCSRKKPSSQSFVVLPNKILKIEESPLHEFYGHTSDVLDLAWSNSDTLLSSSSDKTVRLWKIGSNQCLCVFRHNDYVTCIQFNPVDENYFISGSIDGKVRIWGIHEERVVDWADIRDVISAISYRPDGQGFVVGSLAGTCRFYVSSGKHFQLDAQIRVKGKKRASGNKITGIQFSQKNNQRVMITSEDSKVRILEGIELVQTYKALPRSGSQMSGSFTSDGEHIISVGGDSRVYIWNFNDLENTSSKSTKSKYSCEYFGSQGVTIAIPWSSMTAEQRGSGNDFAHYSSEMQHQLEAAHGVRESERFSFGSWFSIDGTCRGSMTWPEEKLPSWDLPLAKVEFEHQKLSVKDPSHEKYASETWGLSIVAADCDGTIKTFHNFGLPIRL 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01754 721 ProSiteProfiles Trp-Asp (WD) repeats profile. 278 319 IPR001680 GO:0005515
Spst9g01754 721 ProSiteProfiles Trp-Asp (WD) repeats profile. 551 581 IPR001680 GO:0005515
Spst9g01754 721 PANTHER WD REPEAT DOMAIN 44 81 718 IPR040324 -
Spst9g01754 721 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 278 313 - -
Spst9g01754 721 ProSiteProfiles Trp-Asp (WD) repeats profile. 365 405 IPR001680 GO:0005515
Spst9g01754 721 SMART WD40_4 531 572 IPR001680 GO:0005515
Spst9g01754 721 SMART WD40_4 399 438 IPR001680 GO:0005515
Spst9g01754 721 SMART WD40_4 440 479 IPR001680 GO:0005515
Spst9g01754 721 SMART WD40_4 358 396 IPR001680 GO:0005515
Spst9g01754 721 SMART WD40_4 271 310 IPR001680 GO:0005515
Spst9g01754 721 SMART WD40_4 490 530 IPR001680 GO:0005515
Spst9g01754 721 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 365 397 - -
Spst9g01754 721 ProSiteProfiles Trp-Asp (WD) repeats profile. 405 447 IPR001680 GO:0005515
Spst9g01754 721 Gene3D - 265 605 IPR015943 GO:0005515
Spst9g01754 721 Pfam WD domain, G-beta repeat 360 396 IPR001680 GO:0005515
Spst9g01754 721 Pfam WD domain, G-beta repeat 277 310 IPR001680 GO:0005515
Spst9g01754 721 Pfam WD domain, G-beta repeat 401 437 IPR001680 GO:0005515
Spst9g01754 721 SUPERFAMILY WD40 repeat-like 274 577 IPR036322 GO:0005515
Spst9g01754 721 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 405 437 - -
Spst9g01754 721 FunFam WD repeat-containing protein 44 262 604 - -
Spst9g01754 721 PRINTS G protein beta WD-40 repeat signature 383 397 IPR020472 -
Spst9g01754 721 PRINTS G protein beta WD-40 repeat signature 297 311 IPR020472 -
Spst9g01754 721 PRINTS G protein beta WD-40 repeat signature 425 439 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01754 Spst-Chr9 19397052 19403070 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01754 362 569 U-box Gene Family AT2G33340 26.697 9.11e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01754 K20241 - gmx:100801576 1049.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01754 9 19397052 19403070 Spst9g01754 9 19397052 19403070 ECH
Spst3g01329 3 16717033 16720511 Spst9g01754 9 19397052 19403070 PCT