Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01753 ATGGTAAGAGCCAGAGACGATCTATGCATCACCGTTCCCACTTTCTTCAAGTGCCCTATTTCTCTTGATGTCATGAAATCCCCTGTCAGCCTCTGCACCGGAGTCACCTACGACCGCTCCAGCATCCAACGCTGGCTCGACGCCGGCAACAACACCTGCCCCGCAACCATGCAACTCCTCCAAACCAAAGACTTCGTTCCCAACCGAACTTTACAAAGCCTCATCCAGATCTGGTCTGACTCGCTTCGTCACTCAGCCCTTCCCCAACATCTCCTCTCCCCGGACCAAGTCCTCCCAACCCTCGCTCAATTGGAAACCGACTCTCTCCGCTCCGCTTCGCTATCCAAACTCCTCCACTTCGCCAAAGATTCTCACCATAACAAACTCTTCCTTGCCAAGCTAGAAGGCTTCGTCGACCGACTAGTTCGTTTCCTCGACAATGTCCACGGAGGAATAATCGCCAGAGCTAGTATTGAATTTCTCGAACAAGTCGTCGTGCTGCTAGGGTTGATTCTCGATTGCGTCGAGGATTGCGAGGGATTGAGAAACTCTTTGCTGAAAGGAGATACACGAAGCATAGATTCCCTGCTTCTCGTTCTTCAACGAGGAGGTTGCGATTCGAAAATCGCCTCCGCTAGGATTCTGGAATTCGTCGCCGCGGACGCGGAGTCGAAGATTTTAATCGCTGAGAAGGAAGGCGCGGTGGCCGAATTGCTGAAGTCCGCGGCGCCGGAGAAAGATCCGGCGCTGGTCGAGGCAGCGCTGGCCAGCCTTGTCGCGATTTCGGCGCCGAAGCGGAACAAATTGAAGCTGGTGAGTCTCGGCGCGGTGAAGGCGATGTCGAGGCTGTTGCTGACGGAGGCGAAGCTGGGTGCAGCGGCGGTGGAGAAGGTGCTGAAGCTGGTAGAGACGGCGTCGTCGACGAGGGAGGGGCGGAGGGAGATATGCGAGGACGCGGCGTGTGTGGCGGCGGTTCTAAGCAAGGTTCTGAAGGTGTCGAACGTGGCGACGGAGCACGCGGTGACGACGCTGTGGAGCGTGTGCTACCTGTTTCGCGATCGCAAGGCGCAGGAGGCGGTGACGCAGGCCAATGGCTTGACCAAGATTCTGTTGCTGATGCAGAGCAACTGTGCGCCGCAAGTGCGCCAAATGTGCACCGATTTGCTCAAGATTTTTCGTGTGAACTCCAAGTCATGTCTTTCGTGCTACGACACCAAGACCACTCATATCATGCCGTTTTGA 1242 0.5588 MVRARDDLCITVPTFFKCPISLDVMKSPVSLCTGVTYDRSSIQRWLDAGNNTCPATMQLLQTKDFVPNRTLQSLIQIWSDSLRHSALPQHLLSPDQVLPTLAQLETDSLRSASLSKLLHFAKDSHHNKLFLAKLEGFVDRLVRFLDNVHGGIIARASIEFLEQVVVLLGLILDCVEDCEGLRNSLLKGDTRSIDSLLLVLQRGGCDSKIASARILEFVAADAESKILIAEKEGAVAELLKSAAPEKDPALVEAALASLVAISAPKRNKLKLVSLGAVKAMSRLLLTEAKLGAAAVEKVLKLVETASSTREGRREICEDAACVAAVLSKVLKVSNVATEHAVTTLWSVCYLFRDRKAQEAVTQANGLTKILLLMQSNCAPQVRQMCTDLLKIFRVNSKSCLSCYDTKTTHIMPF 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01753 413 ProSiteProfiles U-box domain profile. 11 85 IPR003613 GO:0004842|GO:0016567
Spst9g01753 413 FunFam RING-type E3 ubiquitin transferase 4 84 - -
Spst9g01753 413 SUPERFAMILY RING/U-box 6 80 - -
Spst9g01753 413 Gene3D - 105 405 IPR011989 -
Spst9g01753 413 CDD RING-Ubox_PUB 13 65 IPR045210 -
Spst9g01753 413 SMART Ubox_2 15 78 IPR003613 GO:0004842|GO:0016567
Spst9g01753 413 SUPERFAMILY ARM repeat 66 395 IPR016024 -
Spst9g01753 413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 90 IPR013083 -
Spst9g01753 413 PANTHER WDSAM1 PROTEIN 11 401 IPR045185 GO:0061630
Spst9g01753 413 Pfam U-box domain 12 80 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01753 Spst-Chr9 19377554 19378795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01753 5 413 U-box Gene Family AT5G64660 50.957 2.24e-140 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01753 - - gmx:100801033 634.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01753 9 19377554 19378795 Spst9g01753 9 19377554 19378795 ECH
Spst9g01753 9 19377554 19378795 Spst3g01332 3 16743284 16744528 ECH
Spst3g01332 3 16743284 16744528 Spst9g01753 9 19377554 19378795 PCT