Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01746 ATGTATTCTGCTACTACTTTCTTTACTTCACCACTCCTTCATAACCTTGAGAACTTCCACTCAAGAAGGTTGCTACTTGCCTCTCCACTCAACCAATCAGCCAAGCCCCCAGCAAGCAGCCACGATTCAACAGAAACATACCTTGGAGATGGCAATTTCGATGCAAATGTTGTCATGGTACTCTCAGTCCTACTCTGTGCACTCATCTGCTCCTTAGGTTTGAACTCCATCATAAGGTGTGCACTAAGGTGTTCCAATTTCGTAGTGCGTGACTCAGTGGCAACCAACAACCCTCCAGCAAGAGTTGCCAACACAGGAGTGAAGAAGAAAGCCCTCAAGACTTTCACCACAGTGAGTTACTCAGCTGAGCTGAACCTGCCAAGTCTGGACTCAGAGTGTGTGATATGCTTGTCAGAGTTCACAAGTGGTGACAAGGTTCGCATTTTGCCAAAGTGCAACCACGGATTCCACGTACGCTGCATTGACAAATGGCTAAGTTCACACTCTTCATGCCCCAAATGCAGACAGTGCCTAATTGAGACTTGCCAAAAGATTGTTGGGTGCGGTCAGCAAGCTAGCTCCTCTCAACAACCAGTGTTGCAGGTGCCAGAGACCACTGTAACCATCACGCCACTGGAGCCAGAAAGTTTGATGCGTGACTATAGAGAACTTCGCTAA 678 0.4764 MYSATTFFTSPLLHNLENFHSRRLLLASPLNQSAKPPASSHDSTETYLGDGNFDANVVMVLSVLLCALICSLGLNSIIRCALRCSNFVVRDSVATNNPPARVANTGVKKKALKTFTTVSYSAELNLPSLDSECVICLSEFTSGDKVRILPKCNHGFHVRCIDKWLSSHSSCPKCRQCLIETCQKIVGCGQQASSSQQPVLQVPETTVTITPLEPESLMRDYRELR 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01746 225 CDD RING-H2_EL5-like 132 175 - -
Spst9g01746 225 ProSiteProfiles Zinc finger RING-type profile. 133 175 IPR001841 -
Spst9g01746 225 PANTHER RING-H2 FINGER PROTEIN ATL78 15 217 IPR044602 GO:0016567|GO:0016740
Spst9g01746 225 SMART ring_2 133 174 IPR001841 -
Spst9g01746 225 FunFam RING-H2 finger protein ATL73 92 180 - -
Spst9g01746 225 SUPERFAMILY RING/U-box 112 180 - -
Spst9g01746 225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 179 IPR013083 -
Spst9g01746 225 Pfam Ring finger domain 132 175 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01746 Spst-Chr9 19328106 19328783 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01746 30 179 C3H Transcription Factor Family AT3G10910 46.154 2.34e-42 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01746 K19040 - gmx:100807227 384.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01746 9 19328106 19328783 Spst9g01746 9 19328106 19328783 ECH
Spst3g03705 3 87056863 87057459 Spst9g01746 9 19328106 19328783 ECH
Spst3g01341 3 16857986 16858657 Spst9g01746 9 19328106 19328783 PCT