Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01744 ATGCTGGAAATCTCAACTTTACCGGAAATCCCTCCCGGGAATCCGGAGGGAGGCGCCGCGGTGGTCTCCCAGGGGCTGAAAGCGGAGCATGGCGATGACGGTGACCGGAGTTCCGCCGGGATCCGGTGGCCTAAAGCGGAGACAATTGCTTTGCTCAAGATAAGGTCCGAAATGGACGTTGCTTTCAGAGATACAAACCCCAAAGCCCCTCTCTGGGAACAAGTCTCAAGGAAATTAGCGGAGCTAGGATATAATAGGAGTGCGAAGAAGTGCAAGGAGAAATTCGAGAACATTTACAAATACCACAGGAGAACCAAGGACGGTCGTTGTGGCAAATCCAACGGTAGCAAGACTTATAGATTTTTCGAGCAATTGGAAGCTTTAGAAGGACACCACTCACTTCCCCCTCCGTCTATAAGCGCCCCAGAAAATACAACAACAACCACCCACGTGCTCGACAACAACAACATCAACGTTGATGTTATTTTAGATGCGATTCCATGTTCGGTGAGTGCGTACGTGGGGGAGCATTCTAGTTCGACGACTTCGTGTTCGGGGAAGGGGTTTAGAAAGAGGAAGCTGACGCAGTTTCTGGAGGGGATGATGAGGGAAGTGATAGAGAAGCAAGAGACGCTGCAGAGGAAGTTCATGGAGGTGTTGGACAAGTGCGAGAAGGATCGAATGGCGAGGGAGGAAGCGTGGAAGAAGGAGGAGCTGGCGCTGATTAAGAAAGAACGCGAGCTTCTGGCTCAGGAACGCTCAATCGCCGCGGCTAAAGATGAAGTCGTCCTTGCTTTTCTGAAAAAGTTCGCCCAAGCAGAAGGCGCGGTGCAGTTGCTGGAGAAAATTCAGGTTCAAAACGACAACCACAACAAGGACATGCAACAAAATGGGAATATTAATGTTACTGCTAATGGAGGTGGCGGTGGTGGTGTCATTGGTATGGATAAGCGAGAGTGTGGGAATAATCTCAGTGTTAGGAATTTCGTACACATGAGTACTTCGCGGTGGCCAAAGGATGAAGTAGAGGCTCTGATAAGGTTGAGGACTGAACTTGATGTGCAGTCCCAAGGGAACAATAATAATATTAATGGTGTATCTAAGGGGCCTCTCTGGGAGGACATATCTTCGGCCATGAAAGGCCTTGGCTACGATCGCAGTGCCAAGAGGTGTAAAGAGAAATGGGAGAACATAAACAAGTACTTCAAGAGGATGAAGGAGAAGAACAAGAGGAAGCCTCAGGATTCCAAAACGTGTCCTTATTACCACCACCTGGAGGTTCTGTACAGCAAGAAGCCTAAGAGGGTGGATGGAAATGATCTTGGGAAAGAGTTGAAGCCCGAGGAGCTCTTGATGCATATGATGGAGAGTGAAAGTCAAGAAGAGAGACAAGCACAGCAACAACAGATACAGAGTCAGTCATCATCTGAAGATGGTGAGAGAGAGAATACGGATGAGAACGAGGGAGACGATGAAGATCAAAATAGGTTTCAGAATCAGATGGTTGAAAATAGTCCTTCCATAACAATCATGAGTTAA 1539 0.4808 MLEISTLPEIPPGNPEGGAAVVSQGLKAEHGDDGDRSSAGIRWPKAETIALLKIRSEMDVAFRDTNPKAPLWEQVSRKLAELGYNRSAKKCKEKFENIYKYHRRTKDGRCGKSNGSKTYRFFEQLEALEGHHSLPPPSISAPENTTTTTHVLDNNNINVDVILDAIPCSVSAYVGEHSSSTTSCSGKGFRKRKLTQFLEGMMREVIEKQETLQRKFMEVLDKCEKDRMAREEAWKKEELALIKKERELLAQERSIAAAKDEVVLAFLKKFAQAEGAVQLLEKIQVQNDNHNKDMQQNGNINVTANGGGGGGVIGMDKRECGNNLSVRNFVHMSTSRWPKDEVEALIRLRTELDVQSQGNNNNINGVSKGPLWEDISSAMKGLGYDRSAKRCKEKWENINKYFKRMKEKNKRKPQDSKTCPYYHHLEVLYSKKPKRVDGNDLGKELKPEELLMHMMESESQEERQAQQQQIQSQSSSEDGERENTDENEGDDEDQNRFQNQMVENSPSITIMS 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01744 512 MobiDBLite consensus disorder prediction 1 20 - -
Spst9g01744 512 CDD GT1 335 406 - -
Spst9g01744 512 ProSiteProfiles Myb-like domain profile. 335 399 IPR001005 -
Spst9g01744 512 CDD GT1 41 106 - -
Spst9g01744 512 PANTHER FI21293P1 29 489 - -
Spst9g01744 512 ProSiteProfiles Myb-like domain profile. 42 99 IPR001005 -
Spst9g01744 512 MobiDBLite consensus disorder prediction 461 477 - -
Spst9g01744 512 FunFam Trihelix transcription factor GT-2 337 404 - -
Spst9g01744 512 MobiDBLite consensus disorder prediction 498 512 - -
Spst9g01744 512 Pfam Myb/SANT-like DNA-binding domain 335 426 IPR044822 -
Spst9g01744 512 Pfam Myb/SANT-like DNA-binding domain 42 128 IPR044822 -
Spst9g01744 512 SMART sant 39 101 IPR001005 -
Spst9g01744 512 SMART sant 333 401 IPR001005 -
Spst9g01744 512 MobiDBLite consensus disorder prediction 455 512 - -
Spst9g01744 512 Gene3D - 43 104 - -
Spst9g01744 512 Gene3D - 337 404 - -
Spst9g01744 512 FunFam Trihelix transcription factor GT-2 43 104 - -
Spst9g01744 512 Coils Coil 241 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01744 Spst-Chr9 19307857 19309592 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01744 35 434 Trihelix Transcription Factor Family AT1G76880 42.511 3.40e-107 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Spst9g01744 Myb_DNA-bind_4 4.8e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01744 - - pvu:PHAVU_009G147500g 778.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01744 9 19307857 19309592 Spst9g01744 9 19307857 19309592 ECH