Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01706 ATGCACAAACTTTCATCTGATATAAAAACCAGAGAGCGACCGTCGGCGAGCTTACTCGCCGGAAATTCGCTCTTTCTCGTCGGAGCTACCGGAACTTTAATTTCTCCCGATTGTACCTTCGAATTGGGGTTATTTTTGACGCGGCTCCTTTTCAAGGAGCCGTTTGCGCGTAATTATTCGTCGCTTTTCCTTTTTTTTAGCGTTTCAGATTACAATGCAGAGGGGAAGAGGTTCCTGTTGCGGCGGAAGGCATGGGATCTCTTCTCCCTGAAAATCCTGTGTTCTGGAGCGTCGAGAGATTCGGTTTTTTTGTTGTATTCCAATTCAGAAGGGGCGGAGGGTGGTGGTGATTTAGCAAGGGAGAAAGTTTTCAGTATTTTCCGGACAAGCTGCAGAATGCCTTCTGAAGTAATGGAGAAGAGGGGTGTGTCTACCTCATCCCACTTTTTGGATGACATTTCCTATGCTTCTGAGAAGAATATTGGATTACGGAAGCCAAAATCTATTCATGACCATTTTCTACAGGGGAAGAGTGAAATGGTAGCGTCAACTGATAGTATTTTGAATACTTCATCACCTCGTGCAACAAGTGCAAAAACCGGGTTGCCAATGTCTCAGACTACTCTATCTGGGGAAATTACTGAAGACCTACAGTTTGGTAGAGAAGCAGGCACTATAGAGATGCTGAATGATTCCACAGAATCATTTAATTATATTAAGAGGTCATGGTCTAATTTGCATAGGCAGCCAGCATCTAGCTCATATGGTCTAATTGGGAGTAAGATTGTCACCAATGCTGCCTCAAGTGAAAGTAGTCTATTTTCAAGCTCGCTGTCTGAAATGTTTAGCCAAAAGTTGAGGTTTTTGGGGAATGGAGTGCTGTCTGATCAACCCATTACTATTGGTTCCCGTCCTGAGGAAGAACCGCAAAAATCTCTTGAAATTGAGGCTGACACGATTGGAAATCTCCTTCCTGATGAAGATGACCTGTTTTCTGGAGTCACTGACGAATTAGGAAGTAGTACTCGAGCCAGAATGAATGATGATTTTGAAGATTTTGATTTGTTCAGCAGCAGTGGAGGCATGGAATTGGAAGGAGATGAACATCTAATTTCTGGAAAAAGAACCAGTTTTGTGGATGAAGATCCTGATTATTTTGGAGTTTCTAAAGGAAAAGTTCCTTTTGGTGAACAATCTTCTAGAACACTTTTTGTTAGAAACATCAATAGCAATGTTGAAGACTCTGAGCTTAAGGCTCTCTTTGAGCAATATGGAGATATCCGAACCATATACACTGCCTGCAAGCATCGTGGGTTTGTAATGATTTCTTATTATGATCTAAGGGCAGCACAAAATGCAATGCAAGCACTTCAAAATAGGTCTTTGAGATCTAGGAAACTCGATATACATTATTCAATTCCAAAGGGCAATGCTCCAGAGAAAGATATTGGCCATGGTACACTGATGATATCTGATCTTGATTCATCTGTCTTGAATGATGAACTTAAACATATTTTTGGTTTTTATGGAGAAATCAGAGATATCTATGAATGTCCACAATTAAATCATGTCAAATTTATCGAATTTTATGATGTCCGAGCTGCAGAAGCTTCTCTTTGTGCATTGAATGGGATCTGCTTTGCTGGGAAGCACATTAAGCTTGAACCTGGCCTTCCCAAGTTTGCAACATGTATGATGCAGCAGTCTCAGAAGGGACAAGATGAACCTGGTCTTGGTCATAGTCTTAGTGAAAGCATTTCCTTTAGACATAAGGCAGGAGTGTCATCTGGATTTATTGCATCTGCTGGCAGCTTGGAAAATGGATATAATCAGGGATTTCATTCTGCAACACGGCTATCTGCTTTCGTTGATAACTCACTATTTAATATGAATTCTAACATTCACAAAACCTCAAGAGGGGCATCGACTGGAAAAGTATCTGGTGTTTTTGAGGCCAATAACACTATTGACGCAATGAAATTTGCATCTGTTTCAAGGTTCCATCCTCATTCTTTACCTGAATATCGCGATAGTTTAGCTAATGGCAGTCCTTACAACGTCTCAAGTACCATTAGCATGGCTGCCAAGATTGGAACTGGGTCAACAGAATCATCTGGCAGCAGGCACATTCAGGGAATAAACTCAAGTGGGAACCTAGCAGAGTTTAATGGAGGAGGAAATGGAAACCGCCCCAATCATGGACTTTATCAAATGTGGAATGGCTCCAACTTGCAACAGCAACAGCAACCTCCCTCAAATGCCATGCTTTGGCAGAAAACACCATCCTTTGTTAATGGTGCTTGTTCTCCATGTCTCCCACAGATACCCAGTTTTCCTAGAACACCTCCCCATGTGCTTAGAGCATCACATTTAGACCATCAAGTAGGATCAGCTCCGGTTGTTACAGCCTCGCCCTGGGAAAGACAACATTCTTACCTGGGAGAGTCACCTGATGCTTCTGGTTTTAGATTGGGTTCTGTAGGAAGTCCAGGCTTTCATGGTAGCTGGCAGTTGCATCCTCCTGCTTCTCACAACATATTTTCTCATGCTAGTGGAAATGGTACAGAATTGACGTCAACTGCTGGGCAGGGCTCTCCTAAGCAGCTATCAAACGTTTTCCCTGGGAGACTTCCAATGAATTTGGTTTCTAAATTTGATTCTACCAATGAACGAATGAGAAACCTCTATCCTCGGAGAAGCGAACCAAACACTAACAACAATGCAGATAAAAAACAATATGAACTTGACCTAGGTCGCATATTGCGTGGGGATGACAACCGAACAACACTCATGATAAAAAATATTCCCAATAAGTATACATCAAAGATGCTTCTTGCTGCGATAGATGAACAATGTCGAGGAACATATGATTTTCTGTATTTGCCAATTGATTTCAAGAACAAATGTAATGTTGGCTATGCATTCATCAATATGATTGATCCTGGTCAAATTATTCCATTCCACAAGGCTTTTAACGGGAAAAAATGGGAGAAGTTCAACAGTGAAAAGGTAGCAGTACTCGCATATGCCAGAATTCAAGGAAAAGCTGCTCTTATTGCTCATTTTCAGAATTCAAGCCTGATGAATGAAGATAAACGTTGCCGCCCTATTCTTTTCCATACAGATGGCCCAAATGCTGGCGATCCAGAGCCTTTCCCCTTGGGTAACAATATTAGAGTGAGGCCTGGAAAATCTCGCGCTAATGGTAGTGAGGAGAACCGCAGCCAAGGGATTCCTTCATCTTTGGCAAGTGGAGAAGAGTATGGGTCCTCGAGCTCTTCAAAAAACTCTGACTGA 3297 0.4198 MHKLSSDIKTRERPSASLLAGNSLFLVGATGTLISPDCTFELGLFLTRLLFKEPFARNYSSLFLFFSVSDYNAEGKRFLLRRKAWDLFSLKILCSGASRDSVFLLYSNSEGAEGGGDLAREKVFSIFRTSCRMPSEVMEKRGVSTSSHFLDDISYASEKNIGLRKPKSIHDHFLQGKSEMVASTDSILNTSSPRATSAKTGLPMSQTTLSGEITEDLQFGREAGTIEMLNDSTESFNYIKRSWSNLHRQPASSSYGLIGSKIVTNAASSESSLFSSSLSEMFSQKLRFLGNGVLSDQPITIGSRPEEEPQKSLEIEADTIGNLLPDEDDLFSGVTDELGSSTRARMNDDFEDFDLFSSSGGMELEGDEHLISGKRTSFVDEDPDYFGVSKGKVPFGEQSSRTLFVRNINSNVEDSELKALFEQYGDIRTIYTACKHRGFVMISYYDLRAAQNAMQALQNRSLRSRKLDIHYSIPKGNAPEKDIGHGTLMISDLDSSVLNDELKHIFGFYGEIRDIYECPQLNHVKFIEFYDVRAAEASLCALNGICFAGKHIKLEPGLPKFATCMMQQSQKGQDEPGLGHSLSESISFRHKAGVSSGFIASAGSLENGYNQGFHSATRLSAFVDNSLFNMNSNIHKTSRGASTGKVSGVFEANNTIDAMKFASVSRFHPHSLPEYRDSLANGSPYNVSSTISMAAKIGTGSTESSGSRHIQGINSSGNLAEFNGGGNGNRPNHGLYQMWNGSNLQQQQQPPSNAMLWQKTPSFVNGACSPCLPQIPSFPRTPPHVLRASHLDHQVGSAPVVTASPWERQHSYLGESPDASGFRLGSVGSPGFHGSWQLHPPASHNIFSHASGNGTELTSTAGQGSPKQLSNVFPGRLPMNLVSKFDSTNERMRNLYPRRSEPNTNNNADKKQYELDLGRILRGDDNRTTLMIKNIPNKYTSKMLLAAIDEQCRGTYDFLYLPIDFKNKCNVGYAFINMIDPGQIIPFHKAFNGKKWEKFNSEKVAVLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPLGNNIRVRPGKSRANGSEENRSQGIPSSLASGEEYGSSSSSKNSD 1098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01706 1098 Gene3D - 395 484 IPR012677 -
Spst9g01706 1098 Pfam RNA recognition motif 2 927 1023 IPR007201 -
Spst9g01706 1098 SUPERFAMILY RNA-binding domain, RBD 398 559 IPR035979 GO:0003676
Spst9g01706 1098 MobiDBLite consensus disorder prediction 1038 1098 - -
Spst9g01706 1098 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 403 467 IPR000504 GO:0003723
Spst9g01706 1098 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 488 553 IPR000504 GO:0003723
Spst9g01706 1098 FunFam MEI2-like protein 5 isoform 2 390 484 - -
Spst9g01706 1098 SUPERFAMILY RNA-binding domain, RBD 929 1014 IPR035979 GO:0003676
Spst9g01706 1098 FunFam Protein MEI2-like 1 485 578 - -
Spst9g01706 1098 PANTHER RNA RECOGNITION MOTIF-CONTAINING 244 1080 - -
Spst9g01706 1098 MobiDBLite consensus disorder prediction 1069 1098 - -
Spst9g01706 1098 CDD RRM3_MEI2_like 930 1015 IPR034454 -
Spst9g01706 1098 SMART rrm1_1 487 555 IPR000504 GO:0003723
Spst9g01706 1098 SMART rrm1_1 929 1007 IPR000504 GO:0003723
Spst9g01706 1098 SMART rrm1_1 402 470 IPR000504 GO:0003723
Spst9g01706 1098 CDD RRM1_MEI2_like 400 475 IPR034453 -
Spst9g01706 1098 Gene3D - 485 579 IPR012677 -
Spst9g01706 1098 MobiDBLite consensus disorder prediction 850 870 - -
Spst9g01706 1098 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 486 559 IPR000504 GO:0003723
Spst9g01706 1098 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 401 474 IPR000504 GO:0003723
Spst9g01706 1098 MobiDBLite consensus disorder prediction 850 873 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01706 Spst-Chr9 17816288 17824209 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01706 396 552 Eukaryotic Initiation Factors Gene Family AT3G16380 25.281 7.44e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01706 - - gmx:100797616 1650.57