LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst9g01692	ATGAGACCGCTTCTCCAAACGAAGCAGATGTTGGTGGCTGGGGTCCAGAGGCGTGAGTTGTGCTACGAGTATCGAGACATCAAGATTTCGGTGTGGTGGGATTTCGAGAACTGCCAGGTGCCGGTTGGGGTTGACGTTTGGGATGTGGCGCCAGCAATCACGAAGGCCGTGAGAGCGAGCGGAATTAAGGGCCCTCTCCGAATCAACGCTTTCGGCGATGTTATGCAGCTCTCAAAATCCAACCGAGAAGCACTTTCTCACACCGGCATCGATTTTACCCACAATCCGGGTGGAAAGGACAACGCCGATAGATTTCTTCTTGTGAATGTTATGGATTGGGTTTCTCAAAATCCTCCGCCTGCACATCACTTTTTGATATCTGCTGATAAGGACTTTGCTGCAATGTTACACCGGTTAAGAATGCATAATTACAATATATTGCTTGCTACCTCGAGGAATGCTCCTCGTGTCCTCTGTAGTGCAGCAACTATAATATGGCAATGGTCTTCATTAGTAAAAGGAGAAAATCTTTTTGGAAAACATTTTAACCATCCTCATGATGGTTTGTTTGGTTCTTGGTATGGAGATTATAAGGTGATTCCTAAAAAACCGTTCTCAGATGTTGAGAAGTCTTCGTCTTCACAAAAAGTGGATATATATAAACCTTCCGAAGATATACACACTGATCCAAAAGAAGTTGTAATACAGATTTTCCGTGTATTGAGATCATATCCGAAAGGAATCTCAATTGTAGATCTTCGAGCAGAGTTGAAGAAACGTAAAGTGTATTTTGGTAAAAGGTTTTATGGATATGGAACATTTTCTCGCTTTCTATTATCAACACTGCAGGTAGAGCTTGCACCTTTAGGTTGTGGTAATTTTCATGTAAGTCTGGTTCCCTCAGAATCCCCCATACCTTTTGAGGGCAAATTTGTAGAATCAGTAACATCTTATATTAAGATTGATGAGAAGGAATCTGCAGCAACCCCAAATCTAAATGGTGAGGATAAAAACAAGGCTAGACAAGAAAATGTGTCTCGGCCCCCAAACGTGTTGCAGAAATTTTCTGTGTGTAGTGGGAAGGTTGTTGATGAAGTTTGTCAAAACTCATATTCTTTACCAGTTGGTGACTCTATGCTTGATAAAATTCCTAGTGGAAGTGATAAAACATATAGGAATGGTCCAACATTCTTTGGCTGGATCAGAAGTTGGTTGCAATTTTGGAAAGGTAATATAAAATCTGGTGTTTCTGCTGATTATCAGAACAAGGCGGTTTTTGATTTTGAAGATTCCAACACATCTGAACTCTTAGTAGAGGAGGATATGATGCATAAATTGCAGAAGTATGGACTCCCAGTTTTTAGATCTCTCCCTGGAGGAGATATTCTTCAATTGGTGGAACTGTTAATATCAGAGAAAAGGTGGTTGGAGGAGAGCCCCTCCAGAATATTTCCTTTTAGTGTAACCCAGCCAGCTCAGAGGAACTCTGATGAGCCAAACTAA	1503	0.4145	MRPLLQTKQMLVAGVQRRELCYEYRDIKISVWWDFENCQVPVGVDVWDVAPAITKAVRASGIKGPLRINAFGDVMQLSKSNREALSHTGIDFTHNPGGKDNADRFLLVNVMDWVSQNPPPAHHFLISADKDFAAMLHRLRMHNYNILLATSRNAPRVLCSAATIIWQWSSLVKGENLFGKHFNHPHDGLFGSWYGDYKVIPKKPFSDVEKSSSSQKVDIYKPSEDIHTDPKEVVIQIFRVLRSYPKGISIVDLRAELKKRKVYFGKRFYGYGTFSRFLLSTLQVELAPLGCGNFHVSLVPSESPIPFEGKFVESVTSYIKIDEKESAATPNLNGEDKNKARQENVSRPPNVLQKFSVCSGKVVDEVCQNSYSLPVGDSMLDKIPSGSDKTYRNGPTFFGWIRSWLQFWKGNIKSGVSADYQNKAVFDFEDSNTSELLVEEDMMHKLQKYGLPVFRSLPGGDILQLVELLISEKRWLEESPSRIFPFSVTQPAQRNSDEPN	500

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst9g01692	500	CDD	PIN_limkain_b1_N_like	28	151	-	-
	Spst9g01692	500	ProSiteProfiles	OST-type HTH domain profile.	229	300	IPR025605	-
	Spst9g01692	500	PANTHER	LIMKAIN B LKAP	22	477	IPR024768	GO:0005777\|GO:0010468
	Spst9g01692	500	Pfam	NYN domain	28	162	IPR021139	GO:0004540

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst9g01692	Spst-Chr9	17326766	17335088	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst9g01692	23	174	C2H2 Transcription Factor Family	AT5G61190	41.830	4.13e-32	129