Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01691 ATGGATTTGGACGATTTCCGATCCATATTGGACACCTCGGGCGTCGACGTGTGGATGTTCATCGACGCCGCAATCGCCGTCGCCTCCGCGGACTGCGCCGCCGAATTGAAGCGCCGCCGCGACGCCATCGTAGAGAGCCTATACTCCGCCACTGCCGCGCCTCCGCAGTGCCGGAATTGCGACGAAGGCCACCGCCTCAGGCCCAACGGCCATCAAATCACGAAGCAGAACAGCCCTAGCCCTAGCCCCGAGCGGCAACCTCACCAACGCCGCGCCGCCGCCGCCAATTCCCCGGCGACGCCTCAGTCTCCGGACAACGATGATGGCGGCGAGGAGTTGGATCCTTACGGTGGTTTGTTCGACGACGAACAGAAGAAGATTCTAGAAATTAAAGAGCAACTCGAAGAGCCTGACCAGTCCGAAGATTCCTTGCTGGAGTTGCTACAAAGCCTAGCGGACATGGATATTACATTCCAAGCTTTGAAGGAAACTGACATCGGGAGGCACGTGAATCGGTTACGGAAGCATCCTTCAAACGAAGTTCGTCGATTGGTGAAGCTGGTTGTCAGGAAGTGGAAGGAAATTGTGGATGAGTGGGTGAAGTTGAATCCACAGGGAGGAAGCAACACTCTGATGGCTGATGGAGACTCGCCTGTGCAGAAAACCACCCAAAATGGACATCATCATCATCAGATTCCTGATTTTGCATACTCGCCAAATCCACACAATGGGAGCTCAGGGTCTGACCGTAACAACTCGGAAGCAGAACACAAACCAAAAGTAATTCCCCGTAATGAACCTCGACCAAAACCCGCGCCAGCACCATCCGTTTCAACCCCTGCTTCCGCTTCTCAAAACAGACAGAGGGACAGCAGTTTTGACGCCGAGAGGCTTGCTTCAGCCAGAAGGCGGCTTCAAGAGAACTACAAAGAGGCCGAAAATGCCAAAAAGCAAAGAACGATTCAGGTGATGGACATCAATGAATTACCAAAGTCAAAACCCAAGAATGCCTTCTTTGGGAAGAACAAAGGTGGTGGTGGTTCTCAGGGAAGGCACTGGTGA 1062 0.5358 MDLDDFRSILDTSGVDVWMFIDAAIAVASADCAAELKRRRDAIVESLYSATAAPPQCRNCDEGHRLRPNGHQITKQNSPSPSPERQPHQRRAAAANSPATPQSPDNDDGGEELDPYGGLFDDEQKKILEIKEQLEEPDQSEDSLLELLQSLADMDITFQALKETDIGRHVNRLRKHPSNEVRRLVKLVVRKWKEIVDEWVKLNPQGGSNTLMADGDSPVQKTTQNGHHHHQIPDFAYSPNPHNGSSGSDRNNSEAEHKPKVIPRNEPRPKPAPAPSVSTPASASQNRQRDSSFDAERLASARRRLQENYKEAENAKKQRTIQVMDINELPKSKPKNAFFGKNKGGGGSQGRHW 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01691 353 MobiDBLite consensus disorder prediction 203 353 - -
Spst9g01691 353 CDD TFIIS_I 124 197 - -
Spst9g01691 353 ProSiteProfiles TFIIS N-terminal domain profile. 122 199 IPR017923 -
Spst9g01691 353 SMART TFS2_5 127 198 IPR003617 GO:0005634
Spst9g01691 353 MobiDBLite consensus disorder prediction 53 118 - -
Spst9g01691 353 Coils Coil 295 322 - -
Spst9g01691 353 MobiDBLite consensus disorder prediction 203 226 - -
Spst9g01691 353 Pfam TFIIS helical bundle-like domain 147 196 IPR017923 -
Spst9g01691 353 MobiDBLite consensus disorder prediction 70 85 - -
Spst9g01691 353 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 125 209 IPR035441 -
Spst9g01691 353 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 353 IPR044790 -
Spst9g01691 353 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 121 208 IPR035441 -
Spst9g01691 353 MobiDBLite consensus disorder prediction 290 318 - -
Spst9g01691 353 MobiDBLite consensus disorder prediction 251 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01691 Spst-Chr9 17298266 17300150 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Spst9g01691 Med26 7.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01691 - - gmx:100804034 538.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01691 9 17298266 17300150 Spst9g01691 9 17298266 17300150 ECH
Spst9g01691 9 17298266 17300150 Spst3g01351 3 16931033 16932422 ECH
Spst3g01351 3 16931033 16932422 Spst9g01691 9 17298266 17300150 PCT