Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01687 ATGGATGGGAGATTTAGGGACAAGAAAGAGACAGCAGAGCCTGAGGCAGATCCTGAAAGGGATCAGAGGACTGTTTTTGCATACCAGATGCCCTTGAAGGCATCAGAGAGGGATGTTTATGAATTCTTCTCAAAAGCTGGCAAGGTAAGGGATGTTCGTCTTATCATGGATAGGAACTCAAGACGATCTAAAGGAGTTGGGTACATTGAATTTTATGATGCAATGTCCGTGCCAATGGCAATTGCTCTCTCTGGCCAACTTCTTCTGGGACAACCTGTAATGGTCAAACCTTCTGAGGCTGAGAAGAACCTTGTCCAATCTAATACTACTAGTGGAGCTGCTGGGGTTGTAGGACCATATGGAGCTGTGGACAGGAAGCTGTATGTGGGGAACCTTCACTTCAACATGACAGAGAGTCAATTGAGAGAGATTTTTGAGCCATTTGGTCCAGTGGAGCTTGTGCAACTGCCTCTTGACTTAGAGACGGGACATTGCAAGGGCTTTGGGTTTGTTCAATTTGCCCATCTTGAGCATGCCAAGGCTGCTCAGAGTTTAAATGGAAAACTGGAAATTGCTGGCAGGACTATAAAGGTTTCATCTGTAACAGATCATGTCGGAAACCAAGATACAACTGCAAAATCTGCAGACTTTGATGATGATGAAGGTGGATTGGCTTTAAATGCCCAGTCAAGAGCATTGCTTATGCAGAAACTGGACCGCTCTGGCATTGCCGCAAGTATTGGTCTGCCCGTTGTGAATGGGTCAGCTCCTGCTCAACAGGCTATTATGCCTATTGGTAATCCAGGTATAATACCAGCACCAGCTGTCCCAACGCAAATTATGCCTACCCCAGTAATTGAACCTGTTGGAAATCCCAGTGAGTGTTTACTTCTAAAGAATATGTTTGATCCAAACACTGAGACAGAGCCAGATTTTGATCTAGACATTAAAGAGGATGTGGAAGAAGAGTGTTCCAAATATGGACGGGTGAAGCATATTTATGTTGACAAAAGAAGTGCAGGTTTTGTGTATTTGCAGTTTGAAACAGTGGAAGCAGCTAGTGCTGCTCAACGTGCAATGCACACAAGGTGGTTTGCAGGCAGAATGATTTCTGCTATCTACATGCAACCTCAGATATATGAAGCCAAGTTCAAAGGGGACACTTGA 1167 0.4456 MDGRFRDKKETAEPEADPERDQRTVFAYQMPLKASERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTTSGAAGVVGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVELVQLPLDLETGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHVGNQDTTAKSADFDDDEGGLALNAQSRALLMQKLDRSGIAASIGLPVVNGSAPAQQAIMPIGNPGIIPAPAVPTQIMPTPVIEPVGNPSECLLLKNMFDPNTETEPDFDLDIKEDVEEECSKYGRVKHIYVDKRSAGFVYLQFETVEAASAAQRAMHTRWFAGRMISAIYMQPQIYEAKFKGDT 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01687 388 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 299 377 IPR000504 GO:0003723
Spst9g01687 388 Gene3D - 2 109 IPR012677 -
Spst9g01687 388 Gene3D - 290 387 IPR012677 -
Spst9g01687 388 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 218 312 IPR029123 -
Spst9g01687 388 SUPERFAMILY RNA-binding domain, RBD 16 104 IPR035979 GO:0003676
Spst9g01687 388 FunFam Splicing factor, CC1-like protein 289 388 - -
Spst9g01687 388 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 23 100 IPR000504 GO:0003723
Spst9g01687 388 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 125 203 IPR000504 GO:0003723
Spst9g01687 388 FunFam RNA-binding protein 39 isoform X1 16 108 - -
Spst9g01687 388 MobiDBLite consensus disorder prediction 1 21 - -
Spst9g01687 388 SMART rrm1_1 126 199 IPR000504 GO:0003723
Spst9g01687 388 SMART rrm1_1 24 96 IPR000504 GO:0003723
Spst9g01687 388 SMART rrm1_1 295 373 IPR000504 GO:0003723
Spst9g01687 388 SUPERFAMILY RNA-binding domain, RBD 291 376 IPR035979 GO:0003676
Spst9g01687 388 CDD RRM3_RBM39_like 293 375 - -
Spst9g01687 388 Gene3D - 121 217 IPR012677 -
Spst9g01687 388 FunFam Splicing factor CC1-like 109 214 - -
Spst9g01687 388 SUPERFAMILY RNA-binding domain, RBD 124 202 IPR035979 GO:0003676
Spst9g01687 388 CDD RRM2_RBM23_RBM39 127 204 - -
Spst9g01687 388 CDD RRM1_RBM39_like 24 96 - -
Spst9g01687 388 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 317 370 IPR000504 GO:0003723
Spst9g01687 388 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 30 92 IPR000504 GO:0003723
Spst9g01687 388 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 127 197 IPR000504 GO:0003723
Spst9g01687 388 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 4 384 IPR006509 GO:0003723|GO:0005634|GO:0006397
Spst9g01687 388 SMART rrm2_1 300 373 IPR003954 GO:0003676
Spst9g01687 388 NCBIfam splicing factor, CC1-like family 5 384 IPR006509 GO:0003723|GO:0005634|GO:0006397
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01687 Spst-Chr9 17232184 17237758 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01687 124 368 Eukaryotic Initiation Factors Gene Family AT4G34110 24.354 8.10e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01687 K13091 - gmx:100802446 722.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01687 9 17232184 17237758 Spst9g01687 9 17232184 17237758 ECH