Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01684 ATGGCGGCGCCTGCGAACAATTTGAACCTTTCCATCGTGGCGAATCCTAGAGAGGGAAACCAGGTTGACAAGAACAAGGAAGGGATAATGAACAACACCGCATTGGCAAGACTATTTCCCGGAATGAATAGGGAGAGAGAGATGTCTGCTATGGTCTCAGCTTTGACCCACGTTGTCACCGGAGAAGCTCCAACAACCACTGATTCTTCGTTTCTTCTTCATCGTCATGATGCTTCTGTTACACCAACCATGCCTTCTTCTGCTTCCACAACGCCTTCTTTACCTTCTTCATCTACTTATGTTCTTGGCACCTCTTCTCATAAGAGAACTAGGGAACATGACACGCCATCATCCTTCTCACATGCCTCTTCTGTACCCAGACGTGGAGAAAGTTCAAACAATATGACAAGCAGAATAACAAGGGAAATGGGAAATGCTGTGTATGAATACAAAACAACAGAGAATGTGAGGAGGGATGAGGGGAGGAGGAAATACAGAGGAGTGAGGCAGAGGCCGTGGGGGAAATGGGCGGCGGAGATAAGAGATCCGTTCAAGGCGACGAGGGTGTGGTTAGGGACGTTTGACACGGCGGAGGCAGCTGCTAGAGCCTACGATGAGGCTGCCCTTCGATTTAGAGGAAACAAGGCGAAGCTGAACTTCCCTGAGAATGTGACTCTCCGGCAACCTCAGTTTGGTGTTTCCAGTTCTCCGACTTCTCTTGTGTCCATTTCAACGTCCACTGATCCAGTTGTGCACACACGACCTTTTCTCCCTTCTCAAGCTGCGAGCAACGTTTACGAGTATTTTCAGCTCTCGGGCTTCCCTACCACCAACCTTTATGATGATAGGATGTTTGTGACGTCTTCCATGCCTTCTCATCTTCACTCTTCTTCCTCTTCTACTTCTTCTTCTTCGCAGGACACTTCACTCTCTTCCTTATATTCAAGCCAGATACCGCCTTGGTCAGCTTCTGCTCCAAGCTCTTCGTCCTCCGGATGA 999 0.4875 MAAPANNLNLSIVANPREGNQVDKNKEGIMNNTALARLFPGMNREREMSAMVSALTHVVTGEAPTTTDSSFLLHRHDASVTPTMPSSASTTPSLPSSSTYVLGTSSHKRTREHDTPSSFSHASSVPRRGESSNNMTSRITREMGNAVYEYKTTENVRRDEGRRKYRGVRQRPWGKWAAEIRDPFKATRVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFPENVTLRQPQFGVSSSPTSLVSISTSTDPVVHTRPFLPSQAASNVYEYFQLSGFPTTNLYDDRMFVTSSMPSHLHSSSSSTSSSSQDTSLSSLYSSQIPPWSASAPSSSSSG 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01684 332 Gene3D AP2/ERF domain 163 223 IPR036955 GO:0003700|GO:0006355
Spst9g01684 332 PANTHER DNA-BINDING DOMAIN 118 306 IPR044808 GO:0003700|GO:0009873
Spst9g01684 332 PRINTS Ethylene responsive element binding protein signature 187 203 IPR001471 GO:0003700|GO:0006355
Spst9g01684 332 PRINTS Ethylene responsive element binding protein signature 165 176 IPR001471 GO:0003700|GO:0006355
Spst9g01684 332 MobiDBLite consensus disorder prediction 80 105 - -
Spst9g01684 332 FunFam Ethylene-responsive transcription factor 2 163 222 - -
Spst9g01684 332 MobiDBLite consensus disorder prediction 117 134 - -
Spst9g01684 332 MobiDBLite consensus disorder prediction 80 134 - -
Spst9g01684 332 SUPERFAMILY DNA-binding domain 164 222 IPR016177 GO:0003677
Spst9g01684 332 CDD AP2 164 223 IPR001471 GO:0003700|GO:0006355
Spst9g01684 332 ProSiteProfiles AP2/ERF domain profile. 164 221 IPR001471 GO:0003700|GO:0006355
Spst9g01684 332 MobiDBLite consensus disorder prediction 291 332 - -
Spst9g01684 332 Pfam AP2 domain 164 213 IPR001471 GO:0003700|GO:0006355
Spst9g01684 332 SMART rav1_2 164 227 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01684 Spst-Chr9 17167567 17168946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01684 38 259 AP2-EREBP Transcription Factor Family AT5G64750 44.628 1.28e-36 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Spst9g01684 AP2 2.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01684 - - pvu:PHAVU_009G137900g 371.703
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01684 9 17167567 17168946 Spst9g01684 9 17167567 17168946 ECH
Spst3g01359 3 17030136 17030735 Spst9g01684 9 17167567 17168946 ECH