Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01679 ATGGGATGCGTTTGTGGCAAGTTTTCTCCCCCTCACCAAGCTGAGAGGCGGAAACGGGCAGTGAAGAGAGTTGTGAAGAAGGGTTCGAGGCCACGCTCCTCGAATGTGGGAGAGAGGGTGACAAGGGAGACTCAGAGACAGAGAGTTAGTGTGCGGGTCAATAAGGATTCAGGTGGAGATGTTGTAGGAGGAGGAGGAGGAGACGAGGAAAAAGTTGATGCTAAAAAAGAAAAGATTAGGGCATGGGAGGATACTGCTAAAGAAAGTAAGAGTAGTAAAGATTCTGAGGAATCCAAAAATGAATTTGTGGGTGGGTGGCCAAAGTGGTTACTGGATAACATTCCCGCCAATGTTCTGGCTAAGCTTGTTCCCAAGAGTGCTGATTCTTATGAAAAACTTGCCAAGATAGGACGTGGAACATATAGCAATGTGTACAAAGCAAGAGAGAAGGGCACAAGAAAGATTGTAGCTTTGAAGAAGGTACGGTTTGACACGTCGGATTCTGAAAGCATAAAGTTTATGGCAAGAGAGATCATGTTTCTGCAGAAGCTGGATCATCCCAATATCATCAAGCTTAAAGGACTAGCAACATCGAGGATGCAGTATAGTCTTTATCTAGTTTTTGACTTAATGCAGTTTGATCTCACTCGCATTATCTCTCGACCGGGGGAGACACTCACCGAACCACAGATCAAGTGCTATATGCAGCAGCTTCTTTCTGGTCTCCAGCACTGTCACGAGAGGGGAATTATGCACCGAGACATCAAGGCTTCTAACTTGTTAATAGACAGAAGAGGGGTGCTGAAAATTGCAGATTTTGGGCTTGCAACTTCCATTGAATCTGAAAAGCCTCTAACAAATAGAGTGGTAACACTTTGGTATAGAGCTCCAGAGCTTCTTTTGGGTTCAACCGATTATGGATGTAGCATTGATCTCTGGAGTGCAGGGTGCCTCTTGGCTGAGATGTTTGTTGGAAGACCAATTATGCCTGGCAGGACAGAGGTTGAACAAATTCACATGATCTTCAAACTTTGTGGTTCTCCTCCAGAGGATTACTTTAAAAAACTGAAGCTAACAACAAGCTACAGGCCTCCACAACATTACAAACCTACTTACCAAGAGAATTTCCACAAGTTTCCTTCTTCTTCCCAGCCACTCTTGGCTACACTTCTTGATCTCAACCCTGCAAATCGTGGCAGTGCTGCCTCTGCGCTCCAAAGTCAATTCTTCCAATGTAGTCCATTAGCATGTGACCCTTCAGCTTTGCCAGTAATCCACAAAAATGAGGACGAACGCTTACAAACCAAGAGAGGCAAAAGGGACAGGGCTTCTAAAAGAGGGCAACCATCTCAAACAAGTAAAAGTGAAGCTAGTGAATCGGAAAAAAAGCAAATTGCTGAAAAACCCCGTCAAAATGCAGAATCATCAAAAGAGAAGAATGTGAAAGAACAGAAGCAGGGTCAAGAAACTGGACATAGTGGTAGCAGCACATCTTCTGGGTCAAAACTTTTCATGAATGAAGGGATCACAAATGCATCTTTATCGCCAGTTTTTTTCTCTAGTGGCAGTGTGAGAAAATCTCCCAAAACAGAGGGTCACCCAAATGCTCTTAAGAACATAAAGAACTATAGTGCTCTCTTACAGGCCTCTATGATTGATATGATCAACCGCAATGAGGGCAACGAAGTTCCTCAGCTTCGAAAATCCTTATCTGCGTTGGATTTTCGACTTGGTCCAGACAAGCTATCAAACCTCTATGGCTTGCCTGATAAACAGATTTAA 1782 0.4383 MGCVCGKFSPPHQAERRKRAVKRVVKKGSRPRSSNVGERVTRETQRQRVSVRVNKDSGGDVVGGGGGDEEKVDAKKEKIRAWEDTAKESKSSKDSEESKNEFVGGWPKWLLDNIPANVLAKLVPKSADSYEKLAKIGRGTYSNVYKAREKGTRKIVALKKVRFDTSDSESIKFMAREIMFLQKLDHPNIIKLKGLATSRMQYSLYLVFDLMQFDLTRIISRPGETLTEPQIKCYMQQLLSGLQHCHERGIMHRDIKASNLLIDRRGVLKIADFGLATSIESEKPLTNRVVTLWYRAPELLLGSTDYGCSIDLWSAGCLLAEMFVGRPIMPGRTEVEQIHMIFKLCGSPPEDYFKKLKLTTSYRPPQHYKPTYQENFHKFPSSSQPLLATLLDLNPANRGSAASALQSQFFQCSPLACDPSALPVIHKNEDERLQTKRGKRDRASKRGQPSQTSKSEASESEKKQIAEKPRQNAESSKEKNVKEQKQGQETGHSGSSTSSGSKLFMNEGITNASLSPVFFSSGSVRKSPKTEGHPNALKNIKNYSALLQASMIDMINRNEGNEVPQLRKSLSALDFRLGPDKLSNLYGLPDKQI 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01679 593 Pfam Protein kinase domain 130 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst9g01679 593 ProSiteProfiles Protein kinase domain profile. 130 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst9g01679 593 MobiDBLite consensus disorder prediction 66 100 - -
Spst9g01679 593 MobiDBLite consensus disorder prediction 32 50 - -
Spst9g01679 593 FunFam probable serine/threonine-protein kinase At1g54610 117 212 - -
Spst9g01679 593 SMART serkin_6 130 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst9g01679 593 SUPERFAMILY Protein kinase-like (PK-like) 125 413 IPR011009 -
Spst9g01679 593 MobiDBLite consensus disorder prediction 487 503 - -
Spst9g01679 593 Gene3D Transferase(Phosphotransferase) domain 1 213 449 - -
Spst9g01679 593 MobiDBLite consensus disorder prediction 456 486 - -
Spst9g01679 593 MobiDBLite consensus disorder prediction 1 100 - -
Spst9g01679 593 ProSitePatterns Serine/Threonine protein kinases active-site signature. 250 262 IPR008271 GO:0004672|GO:0006468
Spst9g01679 593 ProSitePatterns Protein kinases ATP-binding region signature. 136 159 IPR017441 GO:0005524
Spst9g01679 593 Gene3D Phosphorylase Kinase; domain 1 118 212 - -
Spst9g01679 593 MobiDBLite consensus disorder prediction 427 503 - -
Spst9g01679 593 FunFam Putative serine/threonine-protein kinase 213 448 - -
Spst9g01679 593 PANTHER CELL DIVISION PROTEIN KINASE 128 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01679 Spst-Chr9 17083527 17089127 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01679 125 446 Core Cell Cycle Gene Families AT5G10270 45.217 4.86e-93 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Spst9g01679 Pkinase 1.5e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01679 K08819 - gmx:100782603 845.114